miRNA display CGI


Results 81 - 100 of 261 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23721 3' -66.4 NC_005261.1 + 30357 0.71 0.221939
Target:  5'- gCgGCCCUgaaGGCCGGCGcgccgGGCGccgcggcGCGGGUg -3'
miRNA:   3'- -GgCGGGGa--CCGGCCGU-----UCGC-------CGCCCA- -5'
23721 3' -66.4 NC_005261.1 + 84670 0.71 0.222449
Target:  5'- cCCGCgCCCgcGGCCGcGCAcacgaagccGGCGcGCGGGc -3'
miRNA:   3'- -GGCG-GGGa-CCGGC-CGU---------UCGC-CGCCCa -5'
23721 3' -66.4 NC_005261.1 + 15911 0.7 0.225532
Target:  5'- cCCGCCCCgcgcagccggGGCCggggccggggcccgGGCAggagccgggggcgAGUGGCGGGc -3'
miRNA:   3'- -GGCGGGGa---------CCGG--------------CCGU-------------UCGCCGCCCa -5'
23721 3' -66.4 NC_005261.1 + 68683 0.7 0.227608
Target:  5'- uCCGCCgCgugggGGCCGGCGcggacgacGGCGGCGccGGc -3'
miRNA:   3'- -GGCGGgGa----CCGGCCGU--------UCGCCGC--CCa -5'
23721 3' -66.4 NC_005261.1 + 29325 0.7 0.227608
Target:  5'- gCCGCCgCCcGGCCGcguGCGcuucGGCGGCGcGGg -3'
miRNA:   3'- -GGCGG-GGaCCGGC---CGU----UCGCCGC-CCa -5'
23721 3' -66.4 NC_005261.1 + 105857 0.7 0.227608
Target:  5'- uCCGCCC--GGUCGGCGAuGCGGuUGGGc -3'
miRNA:   3'- -GGCGGGgaCCGGCCGUU-CGCC-GCCCa -5'
23721 3' -66.4 NC_005261.1 + 131415 0.7 0.232867
Target:  5'- cCCGCCgCU-GCCGGC-AGCGGCGccGGc -3'
miRNA:   3'- -GGCGGgGAcCGGCCGuUCGCCGC--CCa -5'
23721 3' -66.4 NC_005261.1 + 97817 0.7 0.232867
Target:  5'- gCGCCCCcgcagacGG-CGGCAaaaacgggGGCGGCGGGc -3'
miRNA:   3'- gGCGGGGa------CCgGCCGU--------UCGCCGCCCa -5'
23721 3' -66.4 NC_005261.1 + 2407 0.7 0.232867
Target:  5'- gCGCCCgCgGGCCccGCGcGGCGGCGGGc -3'
miRNA:   3'- gGCGGG-GaCCGGc-CGU-UCGCCGCCCa -5'
23721 3' -66.4 NC_005261.1 + 129720 0.7 0.232867
Target:  5'- -gGCCCgCcGGCugcagCGGCAgGGCGGCGGGg -3'
miRNA:   3'- ggCGGG-GaCCG-----GCCGU-UCGCCGCCCa -5'
23721 3' -66.4 NC_005261.1 + 87799 0.7 0.238229
Target:  5'- gCCGCgUCCaUGGCCGGCGGGgcugGGaCGGGg -3'
miRNA:   3'- -GGCG-GGG-ACCGGCCGUUCg---CC-GCCCa -5'
23721 3' -66.4 NC_005261.1 + 49195 0.7 0.238229
Target:  5'- -gGCCCUcGGCCGacaGCGAG-GGCGGGa -3'
miRNA:   3'- ggCGGGGaCCGGC---CGUUCgCCGCCCa -5'
23721 3' -66.4 NC_005261.1 + 97160 0.7 0.243693
Target:  5'- gCCGgCCC-GGCCGGCuGGGUcGCGGGc -3'
miRNA:   3'- -GGCgGGGaCCGGCCG-UUCGcCGCCCa -5'
23721 3' -66.4 NC_005261.1 + 23707 0.7 0.243693
Target:  5'- cCCGCCC--GGUCGGguGGCaaGCGGGUg -3'
miRNA:   3'- -GGCGGGgaCCGGCCguUCGc-CGCCCA- -5'
23721 3' -66.4 NC_005261.1 + 80052 0.7 0.243693
Target:  5'- gUCGCCaCUGG-CGGCGGGCG-CGGGg -3'
miRNA:   3'- -GGCGGgGACCgGCCGUUCGCcGCCCa -5'
23721 3' -66.4 NC_005261.1 + 32160 0.7 0.243693
Target:  5'- gCCGCUgcggccgguguaCCUGGCCuGCGGGCGGCGc-- -3'
miRNA:   3'- -GGCGG------------GGACCGGcCGUUCGCCGCcca -5'
23721 3' -66.4 NC_005261.1 + 118134 0.7 0.245907
Target:  5'- gCGCCgCUcGGCCGGCucgcGcagacgcuggccgucGCGGCGGGg -3'
miRNA:   3'- gGCGGgGA-CCGGCCGu---U---------------CGCCGCCCa -5'
23721 3' -66.4 NC_005261.1 + 34451 0.7 0.249261
Target:  5'- aCGCgCCggggcacgGGCCGGgGGccccguaccuGCGGCGGGUg -3'
miRNA:   3'- gGCGgGGa-------CCGGCCgUU----------CGCCGCCCA- -5'
23721 3' -66.4 NC_005261.1 + 46076 0.7 0.254933
Target:  5'- gCCGCCUCgUGGCCGGacaCGAGCacguacGGcCGGGg -3'
miRNA:   3'- -GGCGGGG-ACCGGCC---GUUCG------CC-GCCCa -5'
23721 3' -66.4 NC_005261.1 + 93661 0.7 0.260712
Target:  5'- aCGCCCaCcGGUCcGCGGGCGGCGGc- -3'
miRNA:   3'- gGCGGG-GaCCGGcCGUUCGCCGCCca -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.