miRNA display CGI


Results 21 - 40 of 261 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23721 3' -66.4 NC_005261.1 + 14988 0.66 0.431806
Target:  5'- gCCGCgCC-GGCCGcGCccgGAGCG-CGGGa -3'
miRNA:   3'- -GGCGgGGaCCGGC-CG---UUCGCcGCCCa -5'
23721 3' -66.4 NC_005261.1 + 48244 0.66 0.431806
Target:  5'- aCCGCCCCcgcagcgcggGGCCaauGCAa--GGCGGGg -3'
miRNA:   3'- -GGCGGGGa---------CCGGc--CGUucgCCGCCCa -5'
23721 3' -66.4 NC_005261.1 + 23794 0.66 0.423467
Target:  5'- cUCGCCggggCaGGCCGGCu-GgGGCGGGc -3'
miRNA:   3'- -GGCGGg---GaCCGGCCGuuCgCCGCCCa -5'
23721 3' -66.4 NC_005261.1 + 112166 0.66 0.423467
Target:  5'- aUGCUCUUcGCCGGCc-GCGcGCGGGg -3'
miRNA:   3'- gGCGGGGAcCGGCCGuuCGC-CGCCCa -5'
23721 3' -66.4 NC_005261.1 + 47692 0.66 0.423467
Target:  5'- gCCGCCCgCgGcGCCGcGUcGGCGGCgucGGGg -3'
miRNA:   3'- -GGCGGG-GaC-CGGC-CGuUCGCCG---CCCa -5'
23721 3' -66.4 NC_005261.1 + 14362 0.66 0.423467
Target:  5'- -aGCCgC-GGCCGG--GGCGGCGcGGUg -3'
miRNA:   3'- ggCGGgGaCCGGCCguUCGCCGC-CCA- -5'
23721 3' -66.4 NC_005261.1 + 6072 0.66 0.423467
Target:  5'- cUCGUCCCgacGGCggCGGCAAGCaacgguGGCGGuGg -3'
miRNA:   3'- -GGCGGGGa--CCG--GCCGUUCG------CCGCC-Ca -5'
23721 3' -66.4 NC_005261.1 + 91148 0.66 0.423467
Target:  5'- gCCGUgCCgc-CCGGCGAGUGGCccGGGc -3'
miRNA:   3'- -GGCGgGGaccGGCCGUUCGCCG--CCCa -5'
23721 3' -66.4 NC_005261.1 + 97927 0.66 0.423467
Target:  5'- cCCGCUguaCUGGCCgccagcuccggcGGCAacgagggagguGGCGGCGGa- -3'
miRNA:   3'- -GGCGGg--GACCGG------------CCGU-----------UCGCCGCCca -5'
23721 3' -66.4 NC_005261.1 + 133331 0.66 0.423467
Target:  5'- -aGCUCCUG-CCGGCAcGCGcGCGcGGc -3'
miRNA:   3'- ggCGGGGACcGGCCGUuCGC-CGC-CCa -5'
23721 3' -66.4 NC_005261.1 + 41043 0.66 0.423467
Target:  5'- uUGUCCCcgGcGCCGGCcucagagccGGCGGCGcGGUc -3'
miRNA:   3'- gGCGGGGa-C-CGGCCGu--------UCGCCGC-CCA- -5'
23721 3' -66.4 NC_005261.1 + 10684 0.66 0.423467
Target:  5'- gCCGUCCCcucCCGGCAaaGGCGuucGCGGGc -3'
miRNA:   3'- -GGCGGGGaccGGCCGU--UCGC---CGCCCa -5'
23721 3' -66.4 NC_005261.1 + 38470 0.66 0.423467
Target:  5'- gCGUUCCUGGagcagcaCGGCc-GCGGCGGcGUc -3'
miRNA:   3'- gGCGGGGACCg------GCCGuuCGCCGCC-CA- -5'
23721 3' -66.4 NC_005261.1 + 23851 0.66 0.423467
Target:  5'- cUCGCCggggCaGGCCGGCu-GgGGCGGGc -3'
miRNA:   3'- -GGCGGg---GaCCGGCCGuuCgCCGCCCa -5'
23721 3' -66.4 NC_005261.1 + 1583 0.66 0.423467
Target:  5'- -aGCCCCcagcGGuuGGCGGcGCGGUGGc- -3'
miRNA:   3'- ggCGGGGa---CCggCCGUU-CGCCGCCca -5'
23721 3' -66.4 NC_005261.1 + 24888 0.66 0.41851
Target:  5'- cCCGCCCCcuugcccGGCgGGCGccccuucaagcccucGGCGGCugcagccgccgaGGGg -3'
miRNA:   3'- -GGCGGGGa------CCGgCCGU---------------UCGCCG------------CCCa -5'
23721 3' -66.4 NC_005261.1 + 135068 0.66 0.41851
Target:  5'- cCCGCCgCUuuCCGGCGgcgggcucgcggcccGGCGGCGGa- -3'
miRNA:   3'- -GGCGGgGAccGGCCGU---------------UCGCCGCCca -5'
23721 3' -66.4 NC_005261.1 + 35446 0.66 0.415225
Target:  5'- cCCGCCCCgcgggucuaGGCgCGGCGcGCGcGCgucccgGGGUc -3'
miRNA:   3'- -GGCGGGGa--------CCG-GCCGUuCGC-CG------CCCA- -5'
23721 3' -66.4 NC_005261.1 + 60289 0.66 0.415225
Target:  5'- uCCGCCCCcgcGGCCcGCAGGCaGuCGGc- -3'
miRNA:   3'- -GGCGGGGa--CCGGcCGUUCGcC-GCCca -5'
23721 3' -66.4 NC_005261.1 + 34732 0.66 0.415225
Target:  5'- gCGcCCCCUGG-CGGCc-GCGGgGuGGUg -3'
miRNA:   3'- gGC-GGGGACCgGCCGuuCGCCgC-CCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.