Results 41 - 60 of 261 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
23721 | 3' | -66.4 | NC_005261.1 | + | 28865 | 0.66 | 0.415225 |
Target: 5'- gCCGCCCUUGa--GGCu-GCGGCGcGGa -3' miRNA: 3'- -GGCGGGGACcggCCGuuCGCCGC-CCa -5' |
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23721 | 3' | -66.4 | NC_005261.1 | + | 98214 | 0.66 | 0.415225 |
Target: 5'- gCGCCgCCa---CGGCAGcGCGGCGGGc -3' miRNA: 3'- gGCGG-GGaccgGCCGUU-CGCCGCCCa -5' |
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23721 | 3' | -66.4 | NC_005261.1 | + | 34732 | 0.66 | 0.415225 |
Target: 5'- gCGcCCCCUGG-CGGCc-GCGGgGuGGUg -3' miRNA: 3'- gGC-GGGGACCgGCCGuuCGCCgC-CCA- -5' |
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23721 | 3' | -66.4 | NC_005261.1 | + | 60289 | 0.66 | 0.415225 |
Target: 5'- uCCGCCCCcgcGGCCcGCAGGCaGuCGGc- -3' miRNA: 3'- -GGCGGGGa--CCGGcCGUUCGcC-GCCca -5' |
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23721 | 3' | -66.4 | NC_005261.1 | + | 130598 | 0.66 | 0.415225 |
Target: 5'- cCCGCgCCUGGCCcgucuuugccuGCGccuucaacAGCGcGCGGGg -3' miRNA: 3'- -GGCGgGGACCGGc----------CGU--------UCGC-CGCCCa -5' |
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23721 | 3' | -66.4 | NC_005261.1 | + | 102944 | 0.66 | 0.407082 |
Target: 5'- gCCGCCgCUGcGgCGGCG-GCcGCGGGc -3' miRNA: 3'- -GGCGGgGAC-CgGCCGUuCGcCGCCCa -5' |
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23721 | 3' | -66.4 | NC_005261.1 | + | 106553 | 0.66 | 0.407082 |
Target: 5'- gCCGCgUCCgGGCCGGCGcGCGccggcccCGGGg -3' miRNA: 3'- -GGCG-GGGaCCGGCCGUuCGCc------GCCCa -5' |
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23721 | 3' | -66.4 | NC_005261.1 | + | 77633 | 0.66 | 0.407082 |
Target: 5'- aUGgCCCUGGCCGGCGccaucgccgacGGCcGGCGc-- -3' miRNA: 3'- gGCgGGGACCGGCCGU-----------UCG-CCGCcca -5' |
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23721 | 3' | -66.4 | NC_005261.1 | + | 81595 | 0.66 | 0.407082 |
Target: 5'- cUCGCCgaCCguauCCGGCGcccGCGGCGGGUu -3' miRNA: 3'- -GGCGG--GGacc-GGCCGUu--CGCCGCCCA- -5' |
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23721 | 3' | -66.4 | NC_005261.1 | + | 101461 | 0.66 | 0.407082 |
Target: 5'- -gGCCCCaGcGCC-GCcGGCGGCGGcGUg -3' miRNA: 3'- ggCGGGGaC-CGGcCGuUCGCCGCC-CA- -5' |
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23721 | 3' | -66.4 | NC_005261.1 | + | 115043 | 0.66 | 0.407082 |
Target: 5'- gCCaGCaCCCUGGCgaaGGgGGGCggGGUGGGg -3' miRNA: 3'- -GG-CG-GGGACCGg--CCgUUCG--CCGCCCa -5' |
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23721 | 3' | -66.4 | NC_005261.1 | + | 115466 | 0.66 | 0.403854 |
Target: 5'- uCCGCCUCggugucggucgcgGGCuCGGCc-GCGGCGGc- -3' miRNA: 3'- -GGCGGGGa------------CCG-GCCGuuCGCCGCCca -5' |
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23721 | 3' | -66.4 | NC_005261.1 | + | 78039 | 0.67 | 0.39904 |
Target: 5'- uCCGCCCCa-GCCGGU-GGUcGCGGGc -3' miRNA: 3'- -GGCGGGGacCGGCCGuUCGcCGCCCa -5' |
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23721 | 3' | -66.4 | NC_005261.1 | + | 137690 | 0.67 | 0.39904 |
Target: 5'- aCCGCCCCUcgugcagcgGGCCccgcGCGAcccCGGgGGGUg -3' miRNA: 3'- -GGCGGGGA---------CCGGc---CGUUc--GCCgCCCA- -5' |
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23721 | 3' | -66.4 | NC_005261.1 | + | 102788 | 0.67 | 0.39904 |
Target: 5'- cUCGCCCC-GGCC-GCGAGC-GCGGc- -3' miRNA: 3'- -GGCGGGGaCCGGcCGUUCGcCGCCca -5' |
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23721 | 3' | -66.4 | NC_005261.1 | + | 86928 | 0.67 | 0.39904 |
Target: 5'- aCCGCCgCC--GCCGcGC--GCGGCGGGc -3' miRNA: 3'- -GGCGG-GGacCGGC-CGuuCGCCGCCCa -5' |
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23721 | 3' | -66.4 | NC_005261.1 | + | 36620 | 0.67 | 0.397444 |
Target: 5'- gCGCCCC-GGCgcacaaaCGGCGcgaagccGGCGcGCGGGc -3' miRNA: 3'- gGCGGGGaCCG-------GCCGU-------UCGC-CGCCCa -5' |
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23721 | 3' | -66.4 | NC_005261.1 | + | 60033 | 0.67 | 0.391101 |
Target: 5'- cCCGCCgCC--GUCGGCGccgacGGCGGCGGcGa -3' miRNA: 3'- -GGCGG-GGacCGGCCGU-----UCGCCGCC-Ca -5' |
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23721 | 3' | -66.4 | NC_005261.1 | + | 107247 | 0.67 | 0.391101 |
Target: 5'- gCCGCCCacccgcGGgCGcGCGGGCacgGGCGGGc -3' miRNA: 3'- -GGCGGGga----CCgGC-CGUUCG---CCGCCCa -5' |
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23721 | 3' | -66.4 | NC_005261.1 | + | 2579 | 0.67 | 0.391101 |
Target: 5'- aCuCCCC-GGgCGGCAcGCGGCGGa- -3' miRNA: 3'- gGcGGGGaCCgGCCGUuCGCCGCCca -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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