miRNA display CGI


Results 61 - 80 of 261 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23721 3' -66.4 NC_005261.1 + 58554 0.67 0.391101
Target:  5'- -gGCUCCUGcGCCGucguggccGCGAGCGGCGa-- -3'
miRNA:   3'- ggCGGGGAC-CGGC--------CGUUCGCCGCcca -5'
23721 3' -66.4 NC_005261.1 + 107671 0.67 0.391101
Target:  5'- gCgGCCCC--GCCgGGCGuugccgccGCGGCGGGg -3'
miRNA:   3'- -GgCGGGGacCGG-CCGUu-------CGCCGCCCa -5'
23721 3' -66.4 NC_005261.1 + 2579 0.67 0.391101
Target:  5'- aCuCCCC-GGgCGGCAcGCGGCGGa- -3'
miRNA:   3'- gGcGGGGaCCgGCCGUuCGCCGCCca -5'
23721 3' -66.4 NC_005261.1 + 132164 0.67 0.391101
Target:  5'- gCCGCCgCUG-CaGGCAGcGCgGGCGGGg -3'
miRNA:   3'- -GGCGGgGACcGgCCGUU-CG-CCGCCCa -5'
23721 3' -66.4 NC_005261.1 + 60033 0.67 0.391101
Target:  5'- cCCGCCgCC--GUCGGCGccgacGGCGGCGGcGa -3'
miRNA:   3'- -GGCGG-GGacCGGCCGU-----UCGCCGCC-Ca -5'
23721 3' -66.4 NC_005261.1 + 29384 0.67 0.386387
Target:  5'- aCUGCCCCgagauccgcgaggcGGCCGcGCGcuacGCGGCGGc- -3'
miRNA:   3'- -GGCGGGGa-------------CCGGC-CGUu---CGCCGCCca -5'
23721 3' -66.4 NC_005261.1 + 28565 0.67 0.383265
Target:  5'- gCGgCCCgccgGGCCGaggcgcGCGAGCgccGGCGGGc -3'
miRNA:   3'- gGCgGGGa---CCGGC------CGUUCG---CCGCCCa -5'
23721 3' -66.4 NC_005261.1 + 3862 0.67 0.383265
Target:  5'- gCGCCgCgcGGCCGGCGAGCacGGCGc-- -3'
miRNA:   3'- gGCGGgGa-CCGGCCGUUCG--CCGCcca -5'
23721 3' -66.4 NC_005261.1 + 86484 0.67 0.383265
Target:  5'- aCGCggCCgGGCCGGCGccugucuGCGGCaGGGg -3'
miRNA:   3'- gGCGg-GGaCCGGCCGUu------CGCCG-CCCa -5'
23721 3' -66.4 NC_005261.1 + 127715 0.67 0.383265
Target:  5'- gCUGCgCgUGGCCugccuGGUAgcgggagcuuGGCGGCGGGa -3'
miRNA:   3'- -GGCGgGgACCGG-----CCGU----------UCGCCGCCCa -5'
23721 3' -66.4 NC_005261.1 + 97722 0.67 0.38171
Target:  5'- gUGgCCCgggcgggcuaacGGCUGGCAGG-GGCGGGg -3'
miRNA:   3'- gGCgGGGa-----------CCGGCCGUUCgCCGCCCa -5'
23721 3' -66.4 NC_005261.1 + 118868 0.67 0.375534
Target:  5'- cCCGCggCCCUGGCCucggccaccGCGGGCGcGCuGGUg -3'
miRNA:   3'- -GGCG--GGGACCGGc--------CGUUCGC-CGcCCA- -5'
23721 3' -66.4 NC_005261.1 + 98302 0.67 0.367909
Target:  5'- gCgGCCUCgggGGCgGGCGccgccgccAGCGGCGGc- -3'
miRNA:   3'- -GgCGGGGa--CCGgCCGU--------UCGCCGCCca -5'
23721 3' -66.4 NC_005261.1 + 9170 0.67 0.360392
Target:  5'- gCGCCgCCcGGCCaGGUAcGUGgGCGGGg -3'
miRNA:   3'- gGCGG-GGaCCGG-CCGUuCGC-CGCCCa -5'
23721 3' -66.4 NC_005261.1 + 65372 0.67 0.360392
Target:  5'- -gGCCCgCacGcCCGGCAuuaccuGCGGCGGGUu -3'
miRNA:   3'- ggCGGG-GacC-GGCCGUu-----CGCCGCCCA- -5'
23721 3' -66.4 NC_005261.1 + 44241 0.67 0.360392
Target:  5'- gCCGCCCagcgcgcGGCCgacgccgcGGCGcGCGGgGGGg -3'
miRNA:   3'- -GGCGGGga-----CCGG--------CCGUuCGCCgCCCa -5'
23721 3' -66.4 NC_005261.1 + 3671 0.67 0.360392
Target:  5'- -gGCCgC-GGCCGGCAGGCcGCGGc- -3'
miRNA:   3'- ggCGGgGaCCGGCCGUUCGcCGCCca -5'
23721 3' -66.4 NC_005261.1 + 126683 0.67 0.360392
Target:  5'- -gGCCCUccuccgaGGCCGGCGgugcgggaAGCGGCuGGUu -3'
miRNA:   3'- ggCGGGGa------CCGGCCGU--------UCGCCGcCCA- -5'
23721 3' -66.4 NC_005261.1 + 73471 0.67 0.360392
Target:  5'- gCGCCCCcccugGGCCgcGGCGcGGCGcGCGGa- -3'
miRNA:   3'- gGCGGGGa----CCGG--CCGU-UCGC-CGCCca -5'
23721 3' -66.4 NC_005261.1 + 38537 0.67 0.358157
Target:  5'- gCGCgCCgGGCacagcgccggcgcgCGGCcauGCGGCGGGUu -3'
miRNA:   3'- gGCGgGGaCCG--------------GCCGuu-CGCCGCCCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.