miRNA display CGI


Results 1 - 20 of 261 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23721 3' -66.4 NC_005261.1 + 129 0.78 0.07109
Target:  5'- gCCGCCCCUggugcucgcggGGCUGGCAGGgcuggcggaguUGGCGGGg -3'
miRNA:   3'- -GGCGGGGA-----------CCGGCCGUUC-----------GCCGCCCa -5'
23721 3' -66.4 NC_005261.1 + 216 0.71 0.202802
Target:  5'- gCCGCCCCUGGUgcucgcgGGCcccGCGaGCGGGc -3'
miRNA:   3'- -GGCGGGGACCGg------CCGuu-CGC-CGCCCa -5'
23721 3' -66.4 NC_005261.1 + 348 0.68 0.310814
Target:  5'- cCCGCagCCC-GGCgCGGCccGGCGGCGGuGg -3'
miRNA:   3'- -GGCG--GGGaCCG-GCCGu-UCGCCGCC-Ca -5'
23721 3' -66.4 NC_005261.1 + 460 0.68 0.324431
Target:  5'- -gGCCgCgacGGCCGGCGGGaUGGCGcGGg -3'
miRNA:   3'- ggCGGgGa--CCGGCCGUUC-GCCGC-CCa -5'
23721 3' -66.4 NC_005261.1 + 1284 0.74 0.134344
Target:  5'- gCGCCCa-GGCCGGCGgggcucccgucgccGGCGGCGGc- -3'
miRNA:   3'- gGCGGGgaCCGGCCGU--------------UCGCCGCCca -5'
23721 3' -66.4 NC_005261.1 + 1382 0.72 0.184244
Target:  5'- gCGUCCCaGGCCacgccgGGCGccgcggccgcggcGGCGGCGGGg -3'
miRNA:   3'- gGCGGGGaCCGG------CCGU-------------UCGCCGCCCa -5'
23721 3' -66.4 NC_005261.1 + 1583 0.66 0.423467
Target:  5'- -aGCCCCcagcGGuuGGCGGcGCGGUGGc- -3'
miRNA:   3'- ggCGGGGa---CCggCCGUU-CGCCGCCca -5'
23721 3' -66.4 NC_005261.1 + 2407 0.7 0.232867
Target:  5'- gCGCCCgCgGGCCccGCGcGGCGGCGGGc -3'
miRNA:   3'- gGCGGG-GaCCGGc-CGU-UCGCCGCCCa -5'
23721 3' -66.4 NC_005261.1 + 2450 0.67 0.391101
Target:  5'- gCGCCUCggGGUCgaaGGCGAGCGcCGGGc -3'
miRNA:   3'- gGCGGGGa-CCGG---CCGUUCGCcGCCCa -5'
23721 3' -66.4 NC_005261.1 + 2579 0.67 0.391101
Target:  5'- aCuCCCC-GGgCGGCAcGCGGCGGa- -3'
miRNA:   3'- gGcGGGGaCCgGCCGUuCGCCGCCca -5'
23721 3' -66.4 NC_005261.1 + 2604 0.66 0.431806
Target:  5'- gCCGCCgUCggcggcggGGCCGcCGGGCGGCauGGGg -3'
miRNA:   3'- -GGCGG-GGa-------CCGGCcGUUCGCCG--CCCa -5'
23721 3' -66.4 NC_005261.1 + 2639 0.66 0.440241
Target:  5'- -gGCCCagcacgcgGGCgGGC-AGCGGCGGc- -3'
miRNA:   3'- ggCGGGga------CCGgCCGuUCGCCGCCca -5'
23721 3' -66.4 NC_005261.1 + 2717 0.73 0.141014
Target:  5'- -gGCCCCUGGCCccGGcCGAcuugcgcuugcgccGCGGCGGGc -3'
miRNA:   3'- ggCGGGGACCGG--CC-GUU--------------CGCCGCCCa -5'
23721 3' -66.4 NC_005261.1 + 2779 0.72 0.172039
Target:  5'- cCCGCCCCcgaggGGCUGccGCcGGCGGcCGGGa -3'
miRNA:   3'- -GGCGGGGa----CCGGC--CGuUCGCC-GCCCa -5'
23721 3' -66.4 NC_005261.1 + 3152 0.71 0.207568
Target:  5'- cCCGUCCgaGGCCccGGC-GGCGGCGGc- -3'
miRNA:   3'- -GGCGGGgaCCGG--CCGuUCGCCGCCca -5'
23721 3' -66.4 NC_005261.1 + 3537 0.69 0.266596
Target:  5'- gCCGCCUC-GG-CGcGCAGcGCGGCGGGc -3'
miRNA:   3'- -GGCGGGGaCCgGC-CGUU-CGCCGCCCa -5'
23721 3' -66.4 NC_005261.1 + 3671 0.67 0.360392
Target:  5'- -gGCCgC-GGCCGGCAGGCcGCGGc- -3'
miRNA:   3'- ggCGGgGaCCGGCCGUUCGcCGCCca -5'
23721 3' -66.4 NC_005261.1 + 3862 0.67 0.383265
Target:  5'- gCGCCgCgcGGCCGGCGAGCacGGCGc-- -3'
miRNA:   3'- gGCGGgGa-CCGGCCGUUCG--CCGCcca -5'
23721 3' -66.4 NC_005261.1 + 4376 0.66 0.443641
Target:  5'- cCCGCgCCgccgaagcgcacgcGGCCGGgcGGCGGCGGc- -3'
miRNA:   3'- -GGCGgGGa-------------CCGGCCguUCGCCGCCca -5'
23721 3' -66.4 NC_005261.1 + 4533 0.71 0.21639
Target:  5'- gCCGCggcgagggcgccgggCCCUGGCCuuggcuggauccgcgGGCGGGUccGGCGGGg -3'
miRNA:   3'- -GGCG---------------GGGACCGG---------------CCGUUCG--CCGCCCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.