miRNA display CGI


Results 21 - 40 of 261 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23721 3' -66.4 NC_005261.1 + 4883 0.66 0.448768
Target:  5'- gCCGCCUCagccgcGGCCgccucGGCuucGGCGGCGGc- -3'
miRNA:   3'- -GGCGGGGa-----CCGG-----CCGu--UCGCCGCCca -5'
23721 3' -66.4 NC_005261.1 + 5150 0.67 0.391101
Target:  5'- gCGCCUC-GGcCCGGCGGGCcgcgucgagcagGGcCGGGUc -3'
miRNA:   3'- gGCGGGGaCC-GGCCGUUCG------------CC-GCCCA- -5'
23721 3' -66.4 NC_005261.1 + 5276 0.72 0.180377
Target:  5'- aCGCCa-UGGCCGGCcgcgguGCGcGCGGGUc -3'
miRNA:   3'- gGCGGggACCGGCCGuu----CGC-CGCCCA- -5'
23721 3' -66.4 NC_005261.1 + 5710 0.66 0.415225
Target:  5'- gCCGgcCCCCUuucgcggagaGGCCGGCGggagaAGCGcGCGcGGa -3'
miRNA:   3'- -GGC--GGGGA----------CCGGCCGU-----UCGC-CGC-CCa -5'
23721 3' -66.4 NC_005261.1 + 6072 0.66 0.423467
Target:  5'- cUCGUCCCgacGGCggCGGCAAGCaacgguGGCGGuGg -3'
miRNA:   3'- -GGCGGGGa--CCG--GCCGUUCG------CCGCC-Ca -5'
23721 3' -66.4 NC_005261.1 + 6560 0.69 0.284894
Target:  5'- aCCGCCCCUugccucguuuGCCuGCAguuGGCGGgGGGa -3'
miRNA:   3'- -GGCGGGGAc---------CGGcCGU---UCGCCgCCCa -5'
23721 3' -66.4 NC_005261.1 + 9170 0.67 0.360392
Target:  5'- gCGCCgCCcGGCCaGGUAcGUGgGCGGGg -3'
miRNA:   3'- gGCGG-GGaCCGG-CCGUuCGC-CGCCCa -5'
23721 3' -66.4 NC_005261.1 + 9605 0.77 0.080393
Target:  5'- cCCGCCUCgGGCCcggggugGGCAGGCGG-GGGUg -3'
miRNA:   3'- -GGCGGGGaCCGG-------CCGUUCGCCgCCCA- -5'
23721 3' -66.4 NC_005261.1 + 10097 0.68 0.338488
Target:  5'- cCCGCCgCgccCCGGC-AGCGGCGGcGa -3'
miRNA:   3'- -GGCGGgGaccGGCCGuUCGCCGCC-Ca -5'
23721 3' -66.4 NC_005261.1 + 10684 0.66 0.423467
Target:  5'- gCCGUCCCcucCCGGCAaaGGCGuucGCGGGc -3'
miRNA:   3'- -GGCGGGGaccGGCCGU--UCGC---CGCCCa -5'
23721 3' -66.4 NC_005261.1 + 11916 0.75 0.114066
Target:  5'- cCCGgCCC-GGCCGGCGgcuGCGGCGGc- -3'
miRNA:   3'- -GGCgGGGaCCGGCCGUu--CGCCGCCca -5'
23721 3' -66.4 NC_005261.1 + 12299 0.67 0.352982
Target:  5'- uCCGCCgCgGGCacgGGCGcguAGcCGGCGGGc -3'
miRNA:   3'- -GGCGGgGaCCGg--CCGU---UC-GCCGCCCa -5'
23721 3' -66.4 NC_005261.1 + 12332 0.7 0.260712
Target:  5'- gCGCgCUUGGCCGGCGcggccgccgccGCGGCGGc- -3'
miRNA:   3'- gGCGgGGACCGGCCGUu----------CGCCGCCca -5'
23721 3' -66.4 NC_005261.1 + 12737 0.72 0.179104
Target:  5'- gCCGgcCCCCUGGgcgggcCCGGCGaggucguaggcggcGGUGGCGGGg -3'
miRNA:   3'- -GGC--GGGGACC------GGCCGU--------------UCGCCGCCCa -5'
23721 3' -66.4 NC_005261.1 + 13061 0.78 0.062668
Target:  5'- gCGCCCCUGccgggcgcguccGCCGGCccgucggcGGGCGGCGGGc -3'
miRNA:   3'- gGCGGGGAC------------CGGCCG--------UUCGCCGCCCa -5'
23721 3' -66.4 NC_005261.1 + 13238 0.66 0.451344
Target:  5'- -aGCCCCgaggccgaGGCCGGCGcgccgucaaagacuaGGUccacgcuguuguuGGCGGGg -3'
miRNA:   3'- ggCGGGGa-------CCGGCCGU---------------UCG-------------CCGCCCa -5'
23721 3' -66.4 NC_005261.1 + 14362 0.66 0.423467
Target:  5'- -aGCCgC-GGCCGG--GGCGGCGcGGUg -3'
miRNA:   3'- ggCGGgGaCCGGCCguUCGCCGC-CCA- -5'
23721 3' -66.4 NC_005261.1 + 14988 0.66 0.431806
Target:  5'- gCCGCgCC-GGCCGcGCccgGAGCG-CGGGa -3'
miRNA:   3'- -GGCGgGGaCCGGC-CG---UUCGCcGCCCa -5'
23721 3' -66.4 NC_005261.1 + 15152 0.68 0.345681
Target:  5'- gCCGUCCgCggugggGGUgGGCGuAGCGGCGGcGg -3'
miRNA:   3'- -GGCGGG-Ga-----CCGgCCGU-UCGCCGCC-Ca -5'
23721 3' -66.4 NC_005261.1 + 15911 0.7 0.225532
Target:  5'- cCCGCCCCgcgcagccggGGCCggggccggggcccgGGCAggagccgggggcgAGUGGCGGGc -3'
miRNA:   3'- -GGCGGGGa---------CCGG--------------CCGU-------------UCGCCGCCCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.