miRNA display CGI


Results 61 - 80 of 261 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23721 3' -66.4 NC_005261.1 + 24888 0.66 0.41851
Target:  5'- cCCGCCCCcuugcccGGCgGGCGccccuucaagcccucGGCGGCugcagccgccgaGGGg -3'
miRNA:   3'- -GGCGGGGa------CCGgCCGU---------------UCGCCG------------CCCa -5'
23721 3' -66.4 NC_005261.1 + 26651 0.69 0.29121
Target:  5'- cCUGCCCCUGGgccacacgcCCGGac-GCGGaGGGUa -3'
miRNA:   3'- -GGCGGGGACC---------GGCCguuCGCCgCCCA- -5'
23721 3' -66.4 NC_005261.1 + 26824 0.68 0.345681
Target:  5'- cCUGCCUgcuCUGGgaGGgGGGCGGUGGGc -3'
miRNA:   3'- -GGCGGG---GACCggCCgUUCGCCGCCCa -5'
23721 3' -66.4 NC_005261.1 + 27292 0.71 0.21739
Target:  5'- aCCGCCCUcgcgagcaGGCCGGgcCAAcGCGcGCGGGUc -3'
miRNA:   3'- -GGCGGGGa-------CCGGCC--GUU-CGC-CGCCCA- -5'
23721 3' -66.4 NC_005261.1 + 27368 0.68 0.338488
Target:  5'- aCCGgCgCgaGGCCGGUggGCaGgGGGUa -3'
miRNA:   3'- -GGCgG-GgaCCGGCCGuuCGcCgCCCA- -5'
23721 3' -66.4 NC_005261.1 + 27421 0.76 0.099348
Target:  5'- -aGCCCCgacGGCCGcGCAuauuacaaugaguuuGGCGGCGGGc -3'
miRNA:   3'- ggCGGGGa--CCGGC-CGU---------------UCGCCGCCCa -5'
23721 3' -66.4 NC_005261.1 + 27462 0.72 0.168
Target:  5'- gCCGCCCCgcggGGCgGGCAGGCccucccCGGGc -3'
miRNA:   3'- -GGCGGGGa---CCGgCCGUUCGcc----GCCCa -5'
23721 3' -66.4 NC_005261.1 + 28565 0.67 0.383265
Target:  5'- gCGgCCCgccgGGCCGaggcgcGCGAGCgccGGCGGGc -3'
miRNA:   3'- gGCgGGGa---CCGGC------CGUUCG---CCGCCCa -5'
23721 3' -66.4 NC_005261.1 + 28865 0.66 0.415225
Target:  5'- gCCGCCCUUGa--GGCu-GCGGCGcGGa -3'
miRNA:   3'- -GGCGGGGACcggCCGuuCGCCGC-CCa -5'
23721 3' -66.4 NC_005261.1 + 29325 0.7 0.227608
Target:  5'- gCCGCCgCCcGGCCGcguGCGcuucGGCGGCGcGGg -3'
miRNA:   3'- -GGCGG-GGaCCGGC---CGU----UCGCCGC-CCa -5'
23721 3' -66.4 NC_005261.1 + 29384 0.67 0.386387
Target:  5'- aCUGCCCCgagauccgcgaggcGGCCGcGCGcuacGCGGCGGc- -3'
miRNA:   3'- -GGCGGGGa-------------CCGGC-CGUu---CGCCGCCca -5'
23721 3' -66.4 NC_005261.1 + 29791 0.74 0.122766
Target:  5'- gCCuaCCCggaGGCCGGCGccGGCGGCGcGGg -3'
miRNA:   3'- -GGcgGGGa--CCGGCCGU--UCGCCGC-CCa -5'
23721 3' -66.4 NC_005261.1 + 30357 0.71 0.221939
Target:  5'- gCgGCCCUgaaGGCCGGCGcgccgGGCGccgcggcGCGGGUg -3'
miRNA:   3'- -GgCGGGGa--CCGGCCGU-----UCGC-------CGCCCA- -5'
23721 3' -66.4 NC_005261.1 + 30916 0.69 0.29121
Target:  5'- cCCgGCCCCUcccggccGCCGGCGcagccccucGGgGGCGGGc -3'
miRNA:   3'- -GG-CGGGGAc------CGGCCGU---------UCgCCGCCCa -5'
23721 3' -66.4 NC_005261.1 + 31465 0.69 0.266003
Target:  5'- gCGCCggcggCCUGaguggccGCCGGUgcGCGGCGGGc -3'
miRNA:   3'- gGCGG-----GGAC-------CGGCCGuuCGCCGCCCa -5'
23721 3' -66.4 NC_005261.1 + 31668 0.69 0.29121
Target:  5'- uCUGCCUgcggCUGGCCgcGGCGcGGCGGCGGc- -3'
miRNA:   3'- -GGCGGG----GACCGG--CCGU-UCGCCGCCca -5'
23721 3' -66.4 NC_005261.1 + 32160 0.7 0.243693
Target:  5'- gCCGCUgcggccgguguaCCUGGCCuGCGGGCGGCGc-- -3'
miRNA:   3'- -GGCGG------------GGACCGGcCGUUCGCCGCcca -5'
23721 3' -66.4 NC_005261.1 + 32482 0.69 0.278687
Target:  5'- -gGCuuCCCggGGCCGGCGacggcggcaucGGCGGgGGGUc -3'
miRNA:   3'- ggCG--GGGa-CCGGCCGU-----------UCGCCgCCCA- -5'
23721 3' -66.4 NC_005261.1 + 32531 0.68 0.338488
Target:  5'- cCCgGCCCC-GGCCccGGCc-GCGGCGcGGg -3'
miRNA:   3'- -GG-CGGGGaCCGG--CCGuuCGCCGC-CCa -5'
23721 3' -66.4 NC_005261.1 + 32915 0.67 0.352982
Target:  5'- gCGCgCgUGGggggCGGCGGGCGGgGGGg -3'
miRNA:   3'- gGCGgGgACCg---GCCGUUCGCCgCCCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.