miRNA display CGI


Results 81 - 100 of 261 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23721 3' -66.4 NC_005261.1 + 33360 0.72 0.184678
Target:  5'- aCCGCCgCCgGGCCGcGcCGGGCuGCGGGc -3'
miRNA:   3'- -GGCGG-GGaCCGGC-C-GUUCGcCGCCCa -5'
23721 3' -66.4 NC_005261.1 + 33581 0.72 0.167601
Target:  5'- gCCaGCCCCgcgaGcaccaggggcggcGCCGGCGcgGGCGGCGGGg -3'
miRNA:   3'- -GG-CGGGGa---C-------------CGGCCGU--UCGCCGCCCa -5'
23721 3' -66.4 NC_005261.1 + 33776 0.69 0.284894
Target:  5'- -gGCCCgcggcgagcgCUGGgccCCGcGCGGGCGGCGGGc -3'
miRNA:   3'- ggCGGG----------GACC---GGC-CGUUCGCCGCCCa -5'
23721 3' -66.4 NC_005261.1 + 34334 0.68 0.310814
Target:  5'- -gGCCCCaaggGGCCGG--GGCGGCcgacGGGg -3'
miRNA:   3'- ggCGGGGa---CCGGCCguUCGCCG----CCCa -5'
23721 3' -66.4 NC_005261.1 + 34451 0.7 0.249261
Target:  5'- aCGCgCCggggcacgGGCCGGgGGccccguaccuGCGGCGGGUg -3'
miRNA:   3'- gGCGgGGa-------CCGGCCgUU----------CGCCGCCCA- -5'
23721 3' -66.4 NC_005261.1 + 34732 0.66 0.415225
Target:  5'- gCGcCCCCUGG-CGGCc-GCGGgGuGGUg -3'
miRNA:   3'- gGC-GGGGACCgGCCGuuCGCCgC-CCA- -5'
23721 3' -66.4 NC_005261.1 + 35044 0.71 0.198131
Target:  5'- gCCGCCCUaacggcGGCCGcGC-GGCGGCGGu- -3'
miRNA:   3'- -GGCGGGGa-----CCGGC-CGuUCGCCGCCca -5'
23721 3' -66.4 NC_005261.1 + 35446 0.66 0.415225
Target:  5'- cCCGCCCCgcgggucuaGGCgCGGCGcGCGcGCgucccgGGGUc -3'
miRNA:   3'- -GGCGGGGa--------CCG-GCCGUuCGC-CG------CCCA- -5'
23721 3' -66.4 NC_005261.1 + 35502 0.68 0.310814
Target:  5'- cCCGCCCUUGccccGCUGGC-AGCGGCa--- -3'
miRNA:   3'- -GGCGGGGAC----CGGCCGuUCGCCGccca -5'
23721 3' -66.4 NC_005261.1 + 35666 0.75 0.116043
Target:  5'- cCCGCuCCCUGccggccgcacccccGCCGGCGAGCcccGGUGGGc -3'
miRNA:   3'- -GGCG-GGGAC--------------CGGCCGUUCG---CCGCCCa -5'
23721 3' -66.4 NC_005261.1 + 36396 0.72 0.177838
Target:  5'- gCCGgCCCUGGCCcacauagcgggauggGGCAGGCGGCc--- -3'
miRNA:   3'- -GGCgGGGACCGG---------------CCGUUCGCCGccca -5'
23721 3' -66.4 NC_005261.1 + 36620 0.67 0.397444
Target:  5'- gCGCCCC-GGCgcacaaaCGGCGcgaagccGGCGcGCGGGc -3'
miRNA:   3'- gGCGGGGaCCG-------GCCGU-------UCGC-CGCCCa -5'
23721 3' -66.4 NC_005261.1 + 37052 0.67 0.352982
Target:  5'- cCUGCCCCcGGuCCcGCGAGCGGUGa-- -3'
miRNA:   3'- -GGCGGGGaCC-GGcCGUUCGCCGCcca -5'
23721 3' -66.4 NC_005261.1 + 38261 0.66 0.415225
Target:  5'- aCGCCagCCUgGGCUGG-GGGCGGCuGGUg -3'
miRNA:   3'- gGCGG--GGA-CCGGCCgUUCGCCGcCCA- -5'
23721 3' -66.4 NC_005261.1 + 38470 0.66 0.423467
Target:  5'- gCGUUCCUGGagcagcaCGGCc-GCGGCGGcGUc -3'
miRNA:   3'- gGCGGGGACCg------GCCGuuCGCCGCC-CA- -5'
23721 3' -66.4 NC_005261.1 + 38537 0.67 0.358157
Target:  5'- gCGCgCCgGGCacagcgccggcgcgCGGCcauGCGGCGGGUu -3'
miRNA:   3'- gGCGgGGaCCG--------------GCCGuu-CGCCGCCCA- -5'
23721 3' -66.4 NC_005261.1 + 38636 0.75 0.111296
Target:  5'- cCCGCCgCCgacGGUgaCGGUgaAAGCGGCGGGUg -3'
miRNA:   3'- -GGCGG-GGa--CCG--GCCG--UUCGCCGCCCA- -5'
23721 3' -66.4 NC_005261.1 + 38928 0.66 0.431806
Target:  5'- gCGCgCCaaGCCGGC-GGCcgGGCGGGc -3'
miRNA:   3'- gGCGgGGacCGGCCGuUCG--CCGCCCa -5'
23721 3' -66.4 NC_005261.1 + 39366 0.68 0.345681
Target:  5'- gCCGCCUCaucggcGGCCGGgGAG-GGCGGc- -3'
miRNA:   3'- -GGCGGGGa-----CCGGCCgUUCgCCGCCca -5'
23721 3' -66.4 NC_005261.1 + 40257 0.69 0.297635
Target:  5'- gCGCCa-UGG-CGGCGGccGCGGCGGGg -3'
miRNA:   3'- gGCGGggACCgGCCGUU--CGCCGCCCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.