miRNA display CGI


Results 1 - 20 of 261 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23721 3' -66.4 NC_005261.1 + 138131 0.68 0.324431
Target:  5'- -gGCCgCgacGGCCGGCGGGaUGGCGcGGg -3'
miRNA:   3'- ggCGGgGa--CCGGCCGUUC-GCCGC-CCa -5'
23721 3' -66.4 NC_005261.1 + 138019 0.68 0.310814
Target:  5'- cCCGCagCCC-GGCgCGGCccGGCGGCGGuGg -3'
miRNA:   3'- -GGCG--GGGaCCG-GCCGu-UCGCCGCC-Ca -5'
23721 3' -66.4 NC_005261.1 + 137899 0.71 0.202802
Target:  5'- gCCGCCCCUGGUgcucgcgGGCcccGCGaGCGGGc -3'
miRNA:   3'- -GGCGGGGACCGg------CCGuu-CGC-CGCCCa -5'
23721 3' -66.4 NC_005261.1 + 137812 0.78 0.07109
Target:  5'- gCCGCCCCUggugcucgcggGGCUGGCAGGgcuggcggaguUGGCGGGg -3'
miRNA:   3'- -GGCGGGGA-----------CCGGCCGUUC-----------GCCGCCCa -5'
23721 3' -66.4 NC_005261.1 + 137690 0.67 0.39904
Target:  5'- aCCGCCCCUcgugcagcgGGCCccgcGCGAcccCGGgGGGUg -3'
miRNA:   3'- -GGCGGGGA---------CCGGc---CGUUc--GCCgCCCA- -5'
23721 3' -66.4 NC_005261.1 + 135443 0.71 0.21243
Target:  5'- gCCGCCCa-GGCgGcGCGGGCGcuGCGGGa -3'
miRNA:   3'- -GGCGGGgaCCGgC-CGUUCGC--CGCCCa -5'
23721 3' -66.4 NC_005261.1 + 135068 0.66 0.41851
Target:  5'- cCCGCCgCUuuCCGGCGgcgggcucgcggcccGGCGGCGGa- -3'
miRNA:   3'- -GGCGGgGAccGGCCGU---------------UCGCCGCCca -5'
23721 3' -66.4 NC_005261.1 + 135002 0.79 0.059125
Target:  5'- gCGCCCCUGGCgCGGCGGgcccgcacgcggccGCGGCGGcGa -3'
miRNA:   3'- gGCGGGGACCG-GCCGUU--------------CGCCGCC-Ca -5'
23721 3' -66.4 NC_005261.1 + 134553 0.71 0.211939
Target:  5'- aCCGCCCCuugcUGGgCGGCGccgcGGCugcgcagGGCGGGc -3'
miRNA:   3'- -GGCGGGG----ACCgGCCGU----UCG-------CCGCCCa -5'
23721 3' -66.4 NC_005261.1 + 134378 0.71 0.21243
Target:  5'- gCGCCgCUGGCgaCGGCGAGa-GCGGGa -3'
miRNA:   3'- gGCGGgGACCG--GCCGUUCgcCGCCCa -5'
23721 3' -66.4 NC_005261.1 + 134178 0.74 0.138646
Target:  5'- cCCGCUgcuugcggagggCCUGGCgCGGCucGGCGcGCGGGUc -3'
miRNA:   3'- -GGCGG------------GGACCG-GCCGu-UCGC-CGCCCA- -5'
23721 3' -66.4 NC_005261.1 + 133331 0.66 0.423467
Target:  5'- -aGCUCCUG-CCGGCAcGCGcGCGcGGc -3'
miRNA:   3'- ggCGGGGACcGGCCGUuCGC-CGC-CCa -5'
23721 3' -66.4 NC_005261.1 + 132902 0.66 0.448768
Target:  5'- gCGCCgC-GGgCGGCGccgAGCGGCGGc- -3'
miRNA:   3'- gGCGGgGaCCgGCCGU---UCGCCGCCca -5'
23721 3' -66.4 NC_005261.1 + 132164 0.67 0.391101
Target:  5'- gCCGCCgCUG-CaGGCAGcGCgGGCGGGg -3'
miRNA:   3'- -GGCGGgGACcGgCCGUU-CG-CCGCCCa -5'
23721 3' -66.4 NC_005261.1 + 131759 0.69 0.266596
Target:  5'- aCGCC---GGCCGGC--GCGGCGGGc -3'
miRNA:   3'- gGCGGggaCCGGCCGuuCGCCGCCCa -5'
23721 3' -66.4 NC_005261.1 + 131415 0.7 0.232867
Target:  5'- cCCGCCgCU-GCCGGC-AGCGGCGccGGc -3'
miRNA:   3'- -GGCGGgGAcCGGCCGuUCGCCGC--CCa -5'
23721 3' -66.4 NC_005261.1 + 130598 0.66 0.415225
Target:  5'- cCCGCgCCUGGCCcgucuuugccuGCGccuucaacAGCGcGCGGGg -3'
miRNA:   3'- -GGCGgGGACCGGc----------CGU--------UCGC-CGCCCa -5'
23721 3' -66.4 NC_005261.1 + 129720 0.7 0.232867
Target:  5'- -gGCCCgCcGGCugcagCGGCAgGGCGGCGGGg -3'
miRNA:   3'- ggCGGG-GaCCG-----GCCGU-UCGCCGCCCa -5'
23721 3' -66.4 NC_005261.1 + 129592 0.67 0.352982
Target:  5'- gCGCCgCgGGacacgCGGCAAuuucGCGGCGGGg -3'
miRNA:   3'- gGCGGgGaCCg----GCCGUU----CGCCGCCCa -5'
23721 3' -66.4 NC_005261.1 + 128065 0.68 0.310814
Target:  5'- -gGCCauggCgggcgGGCgGGCGAGCGaGCGGGUu -3'
miRNA:   3'- ggCGGg---Ga----CCGgCCGUUCGC-CGCCCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.