miRNA display CGI


Results 21 - 40 of 261 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23721 3' -66.4 NC_005261.1 + 127779 0.75 0.102596
Target:  5'- aCGCCCggcugcucgagcggCgGGCCGGCGccgcGGCGGCGGGc -3'
miRNA:   3'- gGCGGG--------------GaCCGGCCGU----UCGCCGCCCa -5'
23721 3' -66.4 NC_005261.1 + 127715 0.67 0.383265
Target:  5'- gCUGCgCgUGGCCugccuGGUAgcgggagcuuGGCGGCGGGa -3'
miRNA:   3'- -GGCGgGgACCGG-----CCGU----------UCGCCGCCCa -5'
23721 3' -66.4 NC_005261.1 + 127328 0.8 0.046206
Target:  5'- gCCGCCCgCgggGGCCGG--AGCGGCGGGg -3'
miRNA:   3'- -GGCGGG-Ga--CCGGCCguUCGCCGCCCa -5'
23721 3' -66.4 NC_005261.1 + 127297 0.73 0.149058
Target:  5'- -aGCCCUccccGCCGGCuGGCGGUGGGg -3'
miRNA:   3'- ggCGGGGac--CGGCCGuUCGCCGCCCa -5'
23721 3' -66.4 NC_005261.1 + 126995 0.68 0.345681
Target:  5'- aCCGUCaggGGCCGaccccgccGCAGGCGGCGGc- -3'
miRNA:   3'- -GGCGGggaCCGGC--------CGUUCGCCGCCca -5'
23721 3' -66.4 NC_005261.1 + 126683 0.67 0.360392
Target:  5'- -gGCCCUccuccgaGGCCGGCGgugcgggaAGCGGCuGGUu -3'
miRNA:   3'- ggCGGGGa------CCGGCCGU--------UCGCCGcCCA- -5'
23721 3' -66.4 NC_005261.1 + 126071 0.68 0.331405
Target:  5'- gCCGCCC---GCCGGCcu-CGGCGGGc -3'
miRNA:   3'- -GGCGGGgacCGGCCGuucGCCGCCCa -5'
23721 3' -66.4 NC_005261.1 + 125884 0.72 0.190853
Target:  5'- gCGCCCUUGGCUgaaGGCGccugagccagauguGUGGCGGGg -3'
miRNA:   3'- gGCGGGGACCGG---CCGUu-------------CGCCGCCCa -5'
23721 3' -66.4 NC_005261.1 + 123402 0.76 0.098368
Target:  5'- cCCGCCgCUuGCCGGCcAGgGGCGGGc -3'
miRNA:   3'- -GGCGGgGAcCGGCCGuUCgCCGCCCa -5'
23721 3' -66.4 NC_005261.1 + 123075 0.72 0.176581
Target:  5'- -gGCCCCgagaggcGGCCGGCcacgccauuucgccGCGGCGGGa -3'
miRNA:   3'- ggCGGGGa------CCGGCCGuu------------CGCCGCCCa -5'
23721 3' -66.4 NC_005261.1 + 122316 0.69 0.284894
Target:  5'- aCGCCCg-GGCCGGCGgucaGGUGGCGc-- -3'
miRNA:   3'- gGCGGGgaCCGGCCGU----UCGCCGCcca -5'
23721 3' -66.4 NC_005261.1 + 121784 0.68 0.30417
Target:  5'- -gGCCgC-GGCCGGCGGGCugGGCaGGGg -3'
miRNA:   3'- ggCGGgGaCCGGCCGUUCG--CCG-CCCa -5'
23721 3' -66.4 NC_005261.1 + 121628 0.69 0.284894
Target:  5'- cCCGCCgcucggcggCCgccGCCGGCGAGC-GCGGGc -3'
miRNA:   3'- -GGCGG---------GGac-CGGCCGUUCGcCGCCCa -5'
23721 3' -66.4 NC_005261.1 + 121471 0.68 0.30417
Target:  5'- -aGCUCCUcGGCguacCGGCugccgccacgGGGCGGCGGGg -3'
miRNA:   3'- ggCGGGGA-CCG----GCCG----------UUCGCCGCCCa -5'
23721 3' -66.4 NC_005261.1 + 121422 0.66 0.448768
Target:  5'- gCCGCCgCCgcuacgGGgCGGC--GgGGCGGGc -3'
miRNA:   3'- -GGCGG-GGa-----CCgGCCGuuCgCCGCCCa -5'
23721 3' -66.4 NC_005261.1 + 118868 0.67 0.375534
Target:  5'- cCCGCggCCCUGGCCucggccaccGCGGGCGcGCuGGUg -3'
miRNA:   3'- -GGCG--GGGACCGGc--------CGUUCGC-CGcCCA- -5'
23721 3' -66.4 NC_005261.1 + 118821 0.69 0.272588
Target:  5'- gCGCCCUgGGCgCGGCAcugccgcucuGCGGCGcGGa -3'
miRNA:   3'- gGCGGGGaCCG-GCCGUu---------CGCCGC-CCa -5'
23721 3' -66.4 NC_005261.1 + 118652 0.77 0.084727
Target:  5'- -gGCCCCgGGCCGcGCGcucggggcugagGGCGGCGGGc -3'
miRNA:   3'- ggCGGGGaCCGGC-CGU------------UCGCCGCCCa -5'
23721 3' -66.4 NC_005261.1 + 118620 0.67 0.352982
Target:  5'- gCCGUugCCCUGGCC-GCc-GCGGCGGc- -3'
miRNA:   3'- -GGCG--GGGACCGGcCGuuCGCCGCCca -5'
23721 3' -66.4 NC_005261.1 + 118134 0.7 0.245907
Target:  5'- gCGCCgCUcGGCCGGCucgcGcagacgcuggccgucGCGGCGGGg -3'
miRNA:   3'- gGCGGgGA-CCGGCCGu---U---------------CGCCGCCCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.