miRNA display CGI


Results 41 - 60 of 261 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23721 3' -66.4 NC_005261.1 + 117752 0.67 0.351513
Target:  5'- gCCGCCCCcaacgcgacucgGGuCCGGaucGgGGCGGGg -3'
miRNA:   3'- -GGCGGGGa-----------CC-GGCCguuCgCCGCCCa -5'
23721 3' -66.4 NC_005261.1 + 117701 0.67 0.352982
Target:  5'- gCCGgCCCUgaGGCCGGC--GC-GCGGGc -3'
miRNA:   3'- -GGCgGGGA--CCGGCCGuuCGcCGCCCa -5'
23721 3' -66.4 NC_005261.1 + 117674 0.69 0.278687
Target:  5'- gCCGCgCCC-GGCCgGGCccGCGGCGaGGc -3'
miRNA:   3'- -GGCG-GGGaCCGG-CCGuuCGCCGC-CCa -5'
23721 3' -66.4 NC_005261.1 + 115466 0.66 0.403854
Target:  5'- uCCGCCUCggugucggucgcgGGCuCGGCc-GCGGCGGc- -3'
miRNA:   3'- -GGCGGGGa------------CCG-GCCGuuCGCCGCCca -5'
23721 3' -66.4 NC_005261.1 + 115043 0.66 0.407082
Target:  5'- gCCaGCaCCCUGGCgaaGGgGGGCggGGUGGGg -3'
miRNA:   3'- -GG-CG-GGGACCGg--CCgUUCG--CCGCCCa -5'
23721 3' -66.4 NC_005261.1 + 113882 0.7 0.260712
Target:  5'- gUGCCaCCUGuagCGGCGAcGCGGCGGGc -3'
miRNA:   3'- gGCGG-GGACcg-GCCGUU-CGCCGCCCa -5'
23721 3' -66.4 NC_005261.1 + 112166 0.66 0.423467
Target:  5'- aUGCUCUUcGCCGGCc-GCGcGCGGGg -3'
miRNA:   3'- gGCGGGGAcCGGCCGuuCGC-CGCCCa -5'
23721 3' -66.4 NC_005261.1 + 110789 0.69 0.272588
Target:  5'- gUGCUCCgggggacGGCgGGCGAGgaGGCGGGg -3'
miRNA:   3'- gGCGGGGa------CCGgCCGUUCg-CCGCCCa -5'
23721 3' -66.4 NC_005261.1 + 109313 0.72 0.176164
Target:  5'- gCCG-CCCUGGCCuccGCGAGCGcggccGCGGGg -3'
miRNA:   3'- -GGCgGGGACCGGc--CGUUCGC-----CGCCCa -5'
23721 3' -66.4 NC_005261.1 + 109101 0.68 0.345681
Target:  5'- -gGUCCCggacGCCGGCcaugaGGGCGGCGGuGUc -3'
miRNA:   3'- ggCGGGGac--CGGCCG-----UUCGCCGCC-CA- -5'
23721 3' -66.4 NC_005261.1 + 108893 0.71 0.202802
Target:  5'- gCCGCgCUgcccGCCGGCGAGCGgggcGCGGGg -3'
miRNA:   3'- -GGCGgGGac--CGGCCGUUCGC----CGCCCa -5'
23721 3' -66.4 NC_005261.1 + 107671 0.67 0.391101
Target:  5'- gCgGCCCC--GCCgGGCGuugccgccGCGGCGGGg -3'
miRNA:   3'- -GgCGGGGacCGG-CCGUu-------CGCCGCCCa -5'
23721 3' -66.4 NC_005261.1 + 107247 0.67 0.391101
Target:  5'- gCCGCCCacccgcGGgCGcGCGGGCacgGGCGGGc -3'
miRNA:   3'- -GGCGGGga----CCgGC-CGUUCG---CCGCCCa -5'
23721 3' -66.4 NC_005261.1 + 106854 0.68 0.338488
Target:  5'- cCCGCCgCCUGGggGGCGGGCGuccGCGGc- -3'
miRNA:   3'- -GGCGG-GGACCggCCGUUCGC---CGCCca -5'
23721 3' -66.4 NC_005261.1 + 106553 0.66 0.407082
Target:  5'- gCCGCgUCCgGGCCGGCGcGCGccggcccCGGGg -3'
miRNA:   3'- -GGCG-GGGaCCGGCCGUuCGCc------GCCCa -5'
23721 3' -66.4 NC_005261.1 + 105857 0.7 0.227608
Target:  5'- uCCGCCC--GGUCGGCGAuGCGGuUGGGc -3'
miRNA:   3'- -GGCGGGgaCCGGCCGUU-CGCC-GCCCa -5'
23721 3' -66.4 NC_005261.1 + 104985 0.74 0.132079
Target:  5'- cCCGCCCCgGcGCCcagcGCGGGCGGCGGu- -3'
miRNA:   3'- -GGCGGGGaC-CGGc---CGUUCGCCGCCca -5'
23721 3' -66.4 NC_005261.1 + 103845 0.73 0.14204
Target:  5'- cUCGCCCUUGcGCgcgagccgCGGC-GGCGGCGGGg -3'
miRNA:   3'- -GGCGGGGAC-CG--------GCCGuUCGCCGCCCa -5'
23721 3' -66.4 NC_005261.1 + 103595 0.68 0.30417
Target:  5'- cUCGCCgCCgUGGCCgcGGCGgcagcgcgggaGGCGGCGGcGg -3'
miRNA:   3'- -GGCGG-GG-ACCGG--CCGU-----------UCGCCGCC-Ca -5'
23721 3' -66.4 NC_005261.1 + 102944 0.66 0.407082
Target:  5'- gCCGCCgCUGcGgCGGCG-GCcGCGGGc -3'
miRNA:   3'- -GGCGGgGAC-CgGCCGUuCGcCGCCCa -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.