miRNA display CGI


Results 61 - 80 of 261 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23721 3' -66.4 NC_005261.1 + 102788 0.67 0.39904
Target:  5'- cUCGCCCC-GGCC-GCGAGC-GCGGc- -3'
miRNA:   3'- -GGCGGGGaCCGGcCGUUCGcCGCCca -5'
23721 3' -66.4 NC_005261.1 + 101672 0.68 0.317567
Target:  5'- gCGCCUCguaGGCCGaGCcGGCGaaGCGGGc -3'
miRNA:   3'- gGCGGGGa--CCGGC-CGuUCGC--CGCCCa -5'
23721 3' -66.4 NC_005261.1 + 101461 0.66 0.407082
Target:  5'- -gGCCCCaGcGCC-GCcGGCGGCGGcGUg -3'
miRNA:   3'- ggCGGGGaC-CGGcCGuUCGCCGCC-CA- -5'
23721 3' -66.4 NC_005261.1 + 98651 0.66 0.440241
Target:  5'- gCCaCUCCUcGGCCccccaGGCGAG-GGCGGGc -3'
miRNA:   3'- -GGcGGGGA-CCGG-----CCGUUCgCCGCCCa -5'
23721 3' -66.4 NC_005261.1 + 98427 0.75 0.108589
Target:  5'- gCCGuCCCCUgcggacccgGGCCGGUAGGCGGCGc-- -3'
miRNA:   3'- -GGC-GGGGA---------CCGGCCGUUCGCCGCcca -5'
23721 3' -66.4 NC_005261.1 + 98369 0.66 0.431806
Target:  5'- gCGCgggCUCUGGCgGGCGcaauaccggcguGGgGGCGGGc -3'
miRNA:   3'- gGCG---GGGACCGgCCGU------------UCgCCGCCCa -5'
23721 3' -66.4 NC_005261.1 + 98302 0.67 0.367909
Target:  5'- gCgGCCUCgggGGCgGGCGccgccgccAGCGGCGGc- -3'
miRNA:   3'- -GgCGGGGa--CCGgCCGU--------UCGCCGCCca -5'
23721 3' -66.4 NC_005261.1 + 98214 0.66 0.415225
Target:  5'- gCGCCgCCa---CGGCAGcGCGGCGGGc -3'
miRNA:   3'- gGCGG-GGaccgGCCGUU-CGCCGCCCa -5'
23721 3' -66.4 NC_005261.1 + 98188 0.72 0.180377
Target:  5'- gCCGCCgggGGCgCGGCGGGCaGCGGGc -3'
miRNA:   3'- -GGCGGggaCCG-GCCGUUCGcCGCCCa -5'
23721 3' -66.4 NC_005261.1 + 98131 0.73 0.15527
Target:  5'- gCCGCggcaCCggcGGCCGucggcggcaaggccGCGGGCGGCGGGUg -3'
miRNA:   3'- -GGCGg---GGa--CCGGC--------------CGUUCGCCGCCCA- -5'
23721 3' -66.4 NC_005261.1 + 98084 0.68 0.345681
Target:  5'- gUGUCCUUggagaaucugggGGCgCGGCGGGCGGCGaGGc -3'
miRNA:   3'- gGCGGGGA------------CCG-GCCGUUCGCCGC-CCa -5'
23721 3' -66.4 NC_005261.1 + 98036 0.73 0.160177
Target:  5'- aCGCCgcgguaCUGGCgGccGCGGGCGGCGGGa -3'
miRNA:   3'- gGCGGg-----GACCGgC--CGUUCGCCGCCCa -5'
23721 3' -66.4 NC_005261.1 + 97927 0.66 0.423467
Target:  5'- cCCGCUguaCUGGCCgccagcuccggcGGCAacgagggagguGGCGGCGGa- -3'
miRNA:   3'- -GGCGGg--GACCGG------------CCGU-----------UCGCCGCCca -5'
23721 3' -66.4 NC_005261.1 + 97890 0.72 0.172039
Target:  5'- -aGCCCCgGGCCGGCGgaccgucugGGCGcCGGGc -3'
miRNA:   3'- ggCGGGGaCCGGCCGU---------UCGCcGCCCa -5'
23721 3' -66.4 NC_005261.1 + 97817 0.7 0.232867
Target:  5'- gCGCCCCcgcagacGG-CGGCAaaaacgggGGCGGCGGGc -3'
miRNA:   3'- gGCGGGGa------CCgGCCGU--------UCGCCGCCCa -5'
23721 3' -66.4 NC_005261.1 + 97722 0.67 0.38171
Target:  5'- gUGgCCCgggcgggcuaacGGCUGGCAGG-GGCGGGg -3'
miRNA:   3'- gGCgGGGa-----------CCGGCCGUUCgCCGCCCa -5'
23721 3' -66.4 NC_005261.1 + 97655 0.73 0.156016
Target:  5'- gCCGCaCCUggggGGCCGGCGuccgcggGGCuugGGCGGGg -3'
miRNA:   3'- -GGCG-GGGa---CCGGCCGU-------UCG---CCGCCCa -5'
23721 3' -66.4 NC_005261.1 + 97565 0.72 0.189071
Target:  5'- uCCGCCCggGGuuGGCucGGUGGCGcGGg -3'
miRNA:   3'- -GGCGGGgaCCggCCGu-UCGCCGC-CCa -5'
23721 3' -66.4 NC_005261.1 + 97403 0.66 0.448768
Target:  5'- cCUGCCgCgGGCuUGGCGGGCGcGcCGGGc -3'
miRNA:   3'- -GGCGGgGaCCG-GCCGUUCGC-C-GCCCa -5'
23721 3' -66.4 NC_005261.1 + 97238 0.75 0.102596
Target:  5'- gCCGgCCC-GGCCGGCugggucgcggggucGGGUGGCGGGa -3'
miRNA:   3'- -GGCgGGGaCCGGCCG--------------UUCGCCGCCCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.