miRNA display CGI


Results 81 - 100 of 261 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23721 3' -66.4 NC_005261.1 + 97160 0.7 0.243693
Target:  5'- gCCGgCCC-GGCCGGCuGGGUcGCGGGc -3'
miRNA:   3'- -GGCgGGGaCCGGCCG-UUCGcCGCCCa -5'
23721 3' -66.4 NC_005261.1 + 97039 0.73 0.145511
Target:  5'- gCCGCCCacauccacaGGgCGGgGGGCGGCGGGc -3'
miRNA:   3'- -GGCGGGga-------CCgGCCgUUCGCCGCCCa -5'
23721 3' -66.4 NC_005261.1 + 95796 0.68 0.30417
Target:  5'- gCGCUgCUaGCCGGCGc-CGGCGGGg -3'
miRNA:   3'- gGCGGgGAcCGGCCGUucGCCGCCCa -5'
23721 3' -66.4 NC_005261.1 + 95143 0.68 0.345681
Target:  5'- uCCGCCUgCUGGUCGccgggaaccuGCAGuGCGGCGaGGg -3'
miRNA:   3'- -GGCGGG-GACCGGC----------CGUU-CGCCGC-CCa -5'
23721 3' -66.4 NC_005261.1 + 95003 0.66 0.441089
Target:  5'- cCCGCCCUgcggGGCgGGCuauaaagccgccgccGGCGGCGcucGGc -3'
miRNA:   3'- -GGCGGGGa---CCGgCCGu--------------UCGCCGC---CCa -5'
23721 3' -66.4 NC_005261.1 + 94846 0.68 0.317567
Target:  5'- gCGCgCCUGGCCucGGCGcucgcgcacGGCccgGGCGGGc -3'
miRNA:   3'- gGCGgGGACCGG--CCGU---------UCG---CCGCCCa -5'
23721 3' -66.4 NC_005261.1 + 93661 0.7 0.260712
Target:  5'- aCGCCCaCcGGUCcGCGGGCGGCGGc- -3'
miRNA:   3'- gGCGGG-GaCCGGcCGUUCGCCGCCca -5'
23721 3' -66.4 NC_005261.1 + 93549 0.73 0.164047
Target:  5'- gCCGCCCaguagcGGUcgaCGGCGGuGCGGCGGGa -3'
miRNA:   3'- -GGCGGGga----CCG---GCCGUU-CGCCGCCCa -5'
23721 3' -66.4 NC_005261.1 + 92674 0.71 0.21243
Target:  5'- aCCGCUCCagaGGCaggaaCGGCGAGCGggaGCGGGa -3'
miRNA:   3'- -GGCGGGGa--CCG-----GCCGUUCGC---CGCCCa -5'
23721 3' -66.4 NC_005261.1 + 91710 0.68 0.324431
Target:  5'- gCCGgCUgcaaGGCCGGCucgccGCGGCGGGc -3'
miRNA:   3'- -GGCgGGga--CCGGCCGuu---CGCCGCCCa -5'
23721 3' -66.4 NC_005261.1 + 91148 0.66 0.423467
Target:  5'- gCCGUgCCgc-CCGGCGAGUGGCccGGGc -3'
miRNA:   3'- -GGCGgGGaccGGCCGUUCGCCG--CCCa -5'
23721 3' -66.4 NC_005261.1 + 90389 0.67 0.352982
Target:  5'- -gGCCCCgccggcggGGCUGGCGccCGGCGcGGa -3'
miRNA:   3'- ggCGGGGa-------CCGGCCGUucGCCGC-CCa -5'
23721 3' -66.4 NC_005261.1 + 90221 0.68 0.30417
Target:  5'- gCGCCCUcgcgcGGCgGGCGGGCGcGCcgucGGGUa -3'
miRNA:   3'- gGCGGGGa----CCGgCCGUUCGC-CG----CCCA- -5'
23721 3' -66.4 NC_005261.1 + 88780 0.75 0.113507
Target:  5'- cUCGgCCCUGGCCGccggcgccgcgcaGCAggacgccGGCGGCGGGg -3'
miRNA:   3'- -GGCgGGGACCGGC-------------CGU-------UCGCCGCCCa -5'
23721 3' -66.4 NC_005261.1 + 88443 0.72 0.172039
Target:  5'- aCCGCUgCUGGCCGcGCcgcguGAGCGuGUGGGc -3'
miRNA:   3'- -GGCGGgGACCGGC-CG-----UUCGC-CGCCCa -5'
23721 3' -66.4 NC_005261.1 + 88155 0.69 0.266596
Target:  5'- gCGCCCC-GGCCGcGCAGcCGGgcCGGGg -3'
miRNA:   3'- gGCGGGGaCCGGC-CGUUcGCC--GCCCa -5'
23721 3' -66.4 NC_005261.1 + 87953 0.72 0.189071
Target:  5'- gCCGCCac-GGCCcGCcGGCGGCGGGc -3'
miRNA:   3'- -GGCGGggaCCGGcCGuUCGCCGCCCa -5'
23721 3' -66.4 NC_005261.1 + 87799 0.7 0.238229
Target:  5'- gCCGCgUCCaUGGCCGGCGGGgcugGGaCGGGg -3'
miRNA:   3'- -GGCG-GGG-ACCGGCCGUUCg---CC-GCCCa -5'
23721 3' -66.4 NC_005261.1 + 86928 0.67 0.39904
Target:  5'- aCCGCCgCC--GCCGcGC--GCGGCGGGc -3'
miRNA:   3'- -GGCGG-GGacCGGC-CGuuCGCCGCCCa -5'
23721 3' -66.4 NC_005261.1 + 86890 0.74 0.132079
Target:  5'- gCCGCgCCCUGGUCcGCGcGCGGCGcGGa -3'
miRNA:   3'- -GGCG-GGGACCGGcCGUuCGCCGC-CCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.