miRNA display CGI


Results 101 - 120 of 261 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23721 3' -66.4 NC_005261.1 + 86484 0.67 0.383265
Target:  5'- aCGCggCCgGGCCGGCGccugucuGCGGCaGGGg -3'
miRNA:   3'- gGCGg-GGaCCGGCCGUu------CGCCG-CCCa -5'
23721 3' -66.4 NC_005261.1 + 84670 0.71 0.222449
Target:  5'- cCCGCgCCCgcGGCCGcGCAcacgaagccGGCGcGCGGGc -3'
miRNA:   3'- -GGCG-GGGa-CCGGC-CGU---------UCGC-CGCCCa -5'
23721 3' -66.4 NC_005261.1 + 81595 0.66 0.407082
Target:  5'- cUCGCCgaCCguauCCGGCGcccGCGGCGGGUu -3'
miRNA:   3'- -GGCGG--GGacc-GGCCGUu--CGCCGCCCA- -5'
23721 3' -66.4 NC_005261.1 + 81442 0.68 0.324431
Target:  5'- gCCGCCCCgcGGCgGGCGccgccAGCaGCaGGGc -3'
miRNA:   3'- -GGCGGGGa-CCGgCCGU-----UCGcCG-CCCa -5'
23721 3' -66.4 NC_005261.1 + 80052 0.7 0.243693
Target:  5'- gUCGCCaCUGG-CGGCGGGCG-CGGGg -3'
miRNA:   3'- -GGCGGgGACCgGCCGUUCGCcGCCCa -5'
23721 3' -66.4 NC_005261.1 + 78142 0.67 0.352982
Target:  5'- gCCGCCCCgGcGCCcGCcgcuGcCGGCGGGc -3'
miRNA:   3'- -GGCGGGGaC-CGGcCGuu--C-GCCGCCCa -5'
23721 3' -66.4 NC_005261.1 + 78039 0.67 0.39904
Target:  5'- uCCGCCCCa-GCCGGU-GGUcGCGGGc -3'
miRNA:   3'- -GGCGGGGacCGGCCGuUCGcCGCCCa -5'
23721 3' -66.4 NC_005261.1 + 77754 0.72 0.168
Target:  5'- -aGCCCCUacgcaGCCGG--GGCGGCGGGg -3'
miRNA:   3'- ggCGGGGAc----CGGCCguUCGCCGCCCa -5'
23721 3' -66.4 NC_005261.1 + 77633 0.66 0.407082
Target:  5'- aUGgCCCUGGCCGGCGccaucgccgacGGCcGGCGc-- -3'
miRNA:   3'- gGCgGGGACCGGCCGU-----------UCG-CCGCcca -5'
23721 3' -66.4 NC_005261.1 + 77061 0.72 0.168
Target:  5'- aCCGCgCCUGGCCGGUgccgcgcgAGGCgcuGGCGcGGa -3'
miRNA:   3'- -GGCGgGGACCGGCCG--------UUCG---CCGC-CCa -5'
23721 3' -66.4 NC_005261.1 + 76037 0.78 0.062194
Target:  5'- gCGCCCCgcgcgccaucagcgUGGCCGGCGGGCgccaccagGGCGGGc -3'
miRNA:   3'- gGCGGGG--------------ACCGGCCGUUCG--------CCGCCCa -5'
23721 3' -66.4 NC_005261.1 + 75068 0.66 0.431806
Target:  5'- aCCGCgCgc-GCCGGCGGGggcuCGGCGGGc -3'
miRNA:   3'- -GGCGgGgacCGGCCGUUC----GCCGCCCa -5'
23721 3' -66.4 NC_005261.1 + 74467 0.78 0.069323
Target:  5'- gCCGCCCCcGGCgCGGCGuGCcugGGCGGGa -3'
miRNA:   3'- -GGCGGGGaCCG-GCCGUuCG---CCGCCCa -5'
23721 3' -66.4 NC_005261.1 + 74441 0.73 0.145511
Target:  5'- gCGCCCCc--CCGGCGGGgGGUGGGg -3'
miRNA:   3'- gGCGGGGaccGGCCGUUCgCCGCCCa -5'
23721 3' -66.4 NC_005261.1 + 73471 0.67 0.360392
Target:  5'- gCGCCCCcccugGGCCgcGGCGcGGCGcGCGGa- -3'
miRNA:   3'- gGCGGGGa----CCGG--CCGU-UCGC-CGCCca -5'
23721 3' -66.4 NC_005261.1 + 73351 0.68 0.30417
Target:  5'- uCCGCCCg-GcGCCGGCucAGGCGGCGc-- -3'
miRNA:   3'- -GGCGGGgaC-CGGCCG--UUCGCCGCcca -5'
23721 3' -66.4 NC_005261.1 + 72726 0.69 0.29121
Target:  5'- gCCGCCCCgu-CCGcGCGGGCggcccgcauGGCGGGc -3'
miRNA:   3'- -GGCGGGGaccGGC-CGUUCG---------CCGCCCa -5'
23721 3' -66.4 NC_005261.1 + 72417 0.68 0.310814
Target:  5'- cCCGCCCUUGcgcucGCCGcGCuugccccCGGCGGGg -3'
miRNA:   3'- -GGCGGGGAC-----CGGC-CGuuc----GCCGCCCa -5'
23721 3' -66.4 NC_005261.1 + 72000 0.68 0.310814
Target:  5'- gUCGCCCCUGGCCuuaacgccgggGGCGAcgcuGCGcGCccccGGGa -3'
miRNA:   3'- -GGCGGGGACCGG-----------CCGUU----CGC-CG----CCCa -5'
23721 3' -66.4 NC_005261.1 + 71949 0.68 0.331405
Target:  5'- gCGCCCCacUGGCguCGGCGcGgGGCGcGGa -3'
miRNA:   3'- gGCGGGG--ACCG--GCCGUuCgCCGC-CCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.