miRNA display CGI


Results 1 - 20 of 261 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23721 3' -66.4 NC_005261.1 + 20016 0.66 0.452205
Target:  5'- cCCGCaCCCguccgcggucagcgGGCCGGUuccgucCGGCGGuGUg -3'
miRNA:   3'- -GGCG-GGGa-------------CCGGCCGuuc---GCCGCC-CA- -5'
23721 3' -66.4 NC_005261.1 + 127779 0.75 0.102596
Target:  5'- aCGCCCggcugcucgagcggCgGGCCGGCGccgcGGCGGCGGGc -3'
miRNA:   3'- gGCGGG--------------GaCCGGCCGU----UCGCCGCCCa -5'
23721 3' -66.4 NC_005261.1 + 98427 0.75 0.108589
Target:  5'- gCCGuCCCCUgcggacccgGGCCGGUAGGCGGCGc-- -3'
miRNA:   3'- -GGC-GGGGA---------CCGGCCGUUCGCCGCcca -5'
23721 3' -66.4 NC_005261.1 + 38636 0.75 0.111296
Target:  5'- cCCGCCgCCgacGGUgaCGGUgaAAGCGGCGGGUg -3'
miRNA:   3'- -GGCGG-GGa--CCG--GCCG--UUCGCCGCCCA- -5'
23721 3' -66.4 NC_005261.1 + 88780 0.75 0.113507
Target:  5'- cUCGgCCCUGGCCGccggcgccgcgcaGCAggacgccGGCGGCGGGg -3'
miRNA:   3'- -GGCgGGGACCGGC-------------CGU-------UCGCCGCCCa -5'
23721 3' -66.4 NC_005261.1 + 23615 0.75 0.114066
Target:  5'- gCCGCCgCU-GCCGGgGcGCGGCGGGg -3'
miRNA:   3'- -GGCGGgGAcCGGCCgUuCGCCGCCCa -5'
23721 3' -66.4 NC_005261.1 + 11916 0.75 0.114066
Target:  5'- cCCGgCCC-GGCCGGCGgcuGCGGCGGc- -3'
miRNA:   3'- -GGCgGGGaCCGGCCGUu--CGCCGCCca -5'
23721 3' -66.4 NC_005261.1 + 35666 0.75 0.116043
Target:  5'- cCCGCuCCCUGccggccgcacccccGCCGGCGAGCcccGGUGGGc -3'
miRNA:   3'- -GGCG-GGGAC--------------CGGCCGUUCG---CCGCCCa -5'
23721 3' -66.4 NC_005261.1 + 29791 0.74 0.122766
Target:  5'- gCCuaCCCggaGGCCGGCGccGGCGGCGcGGg -3'
miRNA:   3'- -GGcgGGGa--CCGGCCGU--UCGCCGC-CCa -5'
23721 3' -66.4 NC_005261.1 + 97238 0.75 0.102596
Target:  5'- gCCGgCCC-GGCCGGCugggucgcggggucGGGUGGCGGGa -3'
miRNA:   3'- -GGCgGGGaCCGGCCG--------------UUCGCCGCCCa -5'
23721 3' -66.4 NC_005261.1 + 27421 0.76 0.099348
Target:  5'- -aGCCCCgacGGCCGcGCAuauuacaaugaguuuGGCGGCGGGc -3'
miRNA:   3'- ggCGGGGa--CCGGC-CGU---------------UCGCCGCCCa -5'
23721 3' -66.4 NC_005261.1 + 123402 0.76 0.098368
Target:  5'- cCCGCCgCUuGCCGGCcAGgGGCGGGc -3'
miRNA:   3'- -GGCGGgGAcCGGCCGuUCgCCGCCCa -5'
23721 3' -66.4 NC_005261.1 + 135002 0.79 0.059125
Target:  5'- gCGCCCCUGGCgCGGCGGgcccgcacgcggccGCGGCGGcGa -3'
miRNA:   3'- gGCGGGGACCG-GCCGUU--------------CGCCGCC-Ca -5'
23721 3' -66.4 NC_005261.1 + 76037 0.78 0.062194
Target:  5'- gCGCCCCgcgcgccaucagcgUGGCCGGCGGGCgccaccagGGCGGGc -3'
miRNA:   3'- gGCGGGG--------------ACCGGCCGUUCG--------CCGCCCa -5'
23721 3' -66.4 NC_005261.1 + 13061 0.78 0.062668
Target:  5'- gCGCCCCUGccgggcgcguccGCCGGCccgucggcGGGCGGCGGGc -3'
miRNA:   3'- gGCGGGGAC------------CGGCCG--------UUCGCCGCCCa -5'
23721 3' -66.4 NC_005261.1 + 74467 0.78 0.069323
Target:  5'- gCCGCCCCcGGCgCGGCGuGCcugGGCGGGa -3'
miRNA:   3'- -GGCGGGGaCCG-GCCGUuCG---CCGCCCa -5'
23721 3' -66.4 NC_005261.1 + 129 0.78 0.07109
Target:  5'- gCCGCCCCUggugcucgcggGGCUGGCAGGgcuggcggaguUGGCGGGg -3'
miRNA:   3'- -GGCGGGGA-----------CCGGCCGUUC-----------GCCGCCCa -5'
23721 3' -66.4 NC_005261.1 + 137812 0.78 0.07109
Target:  5'- gCCGCCCCUggugcucgcggGGCUGGCAGGgcuggcggaguUGGCGGGg -3'
miRNA:   3'- -GGCGGGGA-----------CCGGCCGUUC-----------GCCGCCCa -5'
23721 3' -66.4 NC_005261.1 + 9605 0.77 0.080393
Target:  5'- cCCGCCUCgGGCCcggggugGGCAGGCGG-GGGUg -3'
miRNA:   3'- -GGCGGGGaCCGG-------CCGUUCGCCgCCCA- -5'
23721 3' -66.4 NC_005261.1 + 118652 0.77 0.084727
Target:  5'- -gGCCCCgGGCCGcGCGcucggggcugagGGCGGCGGGc -3'
miRNA:   3'- ggCGGGGaCCGGC-CGU------------UCGCCGCCCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.