Results 41 - 60 of 261 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23721 | 3' | -66.4 | NC_005261.1 | + | 129 | 0.78 | 0.07109 |
Target: 5'- gCCGCCCCUggugcucgcggGGCUGGCAGGgcuggcggaguUGGCGGGg -3' miRNA: 3'- -GGCGGGGA-----------CCGGCCGUUC-----------GCCGCCCa -5' |
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23721 | 3' | -66.4 | NC_005261.1 | + | 74467 | 0.78 | 0.069323 |
Target: 5'- gCCGCCCCcGGCgCGGCGuGCcugGGCGGGa -3' miRNA: 3'- -GGCGGGGaCCG-GCCGUuCG---CCGCCCa -5' |
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23721 | 3' | -66.4 | NC_005261.1 | + | 13061 | 0.78 | 0.062668 |
Target: 5'- gCGCCCCUGccgggcgcguccGCCGGCccgucggcGGGCGGCGGGc -3' miRNA: 3'- gGCGGGGAC------------CGGCCG--------UUCGCCGCCCa -5' |
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23721 | 3' | -66.4 | NC_005261.1 | + | 76037 | 0.78 | 0.062194 |
Target: 5'- gCGCCCCgcgcgccaucagcgUGGCCGGCGGGCgccaccagGGCGGGc -3' miRNA: 3'- gGCGGGG--------------ACCGGCCGUUCG--------CCGCCCa -5' |
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23721 | 3' | -66.4 | NC_005261.1 | + | 135002 | 0.79 | 0.059125 |
Target: 5'- gCGCCCCUGGCgCGGCGGgcccgcacgcggccGCGGCGGcGa -3' miRNA: 3'- gGCGGGGACCG-GCCGUU--------------CGCCGCC-Ca -5' |
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23721 | 3' | -66.4 | NC_005261.1 | + | 38636 | 0.75 | 0.111296 |
Target: 5'- cCCGCCgCCgacGGUgaCGGUgaAAGCGGCGGGUg -3' miRNA: 3'- -GGCGG-GGa--CCG--GCCG--UUCGCCGCCCA- -5' |
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23721 | 3' | -66.4 | NC_005261.1 | + | 88780 | 0.75 | 0.113507 |
Target: 5'- cUCGgCCCUGGCCGccggcgccgcgcaGCAggacgccGGCGGCGGGg -3' miRNA: 3'- -GGCgGGGACCGGC-------------CGU-------UCGCCGCCCa -5' |
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23721 | 3' | -66.4 | NC_005261.1 | + | 2717 | 0.73 | 0.141014 |
Target: 5'- -gGCCCCUGGCCccGGcCGAcuugcgcuugcgccGCGGCGGGc -3' miRNA: 3'- ggCGGGGACCGG--CC-GUU--------------CGCCGCCCa -5' |
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23721 | 3' | -66.4 | NC_005261.1 | + | 134178 | 0.74 | 0.138646 |
Target: 5'- cCCGCUgcuugcggagggCCUGGCgCGGCucGGCGcGCGGGUc -3' miRNA: 3'- -GGCGG------------GGACCG-GCCGu-UCGC-CGCCCA- -5' |
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23721 | 3' | -66.4 | NC_005261.1 | + | 21804 | 0.74 | 0.138646 |
Target: 5'- gCCGCCggCCgGGCCgGGCccGCGGCGGGc -3' miRNA: 3'- -GGCGG--GGaCCGG-CCGuuCGCCGCCCa -5' |
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23721 | 3' | -66.4 | NC_005261.1 | + | 63063 | 0.74 | 0.135326 |
Target: 5'- gCGCCgCgucGCUGGCGcacAGCGGCGGGUa -3' miRNA: 3'- gGCGGgGac-CGGCCGU---UCGCCGCCCA- -5' |
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23721 | 3' | -66.4 | NC_005261.1 | + | 1284 | 0.74 | 0.134344 |
Target: 5'- gCGCCCa-GGCCGGCGgggcucccgucgccGGCGGCGGc- -3' miRNA: 3'- gGCGGGgaCCGGCCGU--------------UCGCCGCCca -5' |
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23721 | 3' | -66.4 | NC_005261.1 | + | 104985 | 0.74 | 0.132079 |
Target: 5'- cCCGCCCCgGcGCCcagcGCGGGCGGCGGu- -3' miRNA: 3'- -GGCGGGGaC-CGGc---CGUUCGCCGCCca -5' |
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23721 | 3' | -66.4 | NC_005261.1 | + | 86890 | 0.74 | 0.132079 |
Target: 5'- gCCGCgCCCUGGUCcGCGcGCGGCGcGGa -3' miRNA: 3'- -GGCG-GGGACCGGcCGUuCGCCGC-CCa -5' |
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23721 | 3' | -66.4 | NC_005261.1 | + | 48638 | 0.74 | 0.125801 |
Target: 5'- cCCGCCCCUGcGCCGGCccccgcccggaGAGCcGCGcGGc -3' miRNA: 3'- -GGCGGGGAC-CGGCCG-----------UUCGcCGC-CCa -5' |
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23721 | 3' | -66.4 | NC_005261.1 | + | 71607 | 0.74 | 0.122766 |
Target: 5'- cCCGCCgCCgcGGCCcgGGCGcgggcccgGGCGGCGGGa -3' miRNA: 3'- -GGCGG-GGa-CCGG--CCGU--------UCGCCGCCCa -5' |
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23721 | 3' | -66.4 | NC_005261.1 | + | 29791 | 0.74 | 0.122766 |
Target: 5'- gCCuaCCCggaGGCCGGCGccGGCGGCGcGGg -3' miRNA: 3'- -GGcgGGGa--CCGGCCGU--UCGCCGC-CCa -5' |
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23721 | 3' | -66.4 | NC_005261.1 | + | 35666 | 0.75 | 0.116043 |
Target: 5'- cCCGCuCCCUGccggccgcacccccGCCGGCGAGCcccGGUGGGc -3' miRNA: 3'- -GGCG-GGGAC--------------CGGCCGUUCG---CCGCCCa -5' |
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23721 | 3' | -66.4 | NC_005261.1 | + | 11916 | 0.75 | 0.114066 |
Target: 5'- cCCGgCCC-GGCCGGCGgcuGCGGCGGc- -3' miRNA: 3'- -GGCgGGGaCCGGCCGUu--CGCCGCCca -5' |
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23721 | 3' | -66.4 | NC_005261.1 | + | 23615 | 0.75 | 0.114066 |
Target: 5'- gCCGCCgCU-GCCGGgGcGCGGCGGGg -3' miRNA: 3'- -GGCGGgGAcCGGCCgUuCGCCGCCCa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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