Results 81 - 100 of 261 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23721 | 3' | -66.4 | NC_005261.1 | + | 69289 | 0.73 | 0.160177 |
Target: 5'- gCCGaCCCCggcgcgggGcGCCGGU-GGCGGCGGGa -3' miRNA: 3'- -GGC-GGGGa-------C-CGGCCGuUCGCCGCCCa -5' |
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23721 | 3' | -66.4 | NC_005261.1 | + | 98036 | 0.73 | 0.160177 |
Target: 5'- aCGCCgcgguaCUGGCgGccGCGGGCGGCGGGa -3' miRNA: 3'- gGCGGg-----GACCGgC--CGUUCGCCGCCCa -5' |
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23721 | 3' | -66.4 | NC_005261.1 | + | 50617 | 0.73 | 0.164047 |
Target: 5'- gCGCCCCgauugGuGCUccacGCGGGCGGCGGGg -3' miRNA: 3'- gGCGGGGa----C-CGGc---CGUUCGCCGCCCa -5' |
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23721 | 3' | -66.4 | NC_005261.1 | + | 93549 | 0.73 | 0.164047 |
Target: 5'- gCCGCCCaguagcGGUcgaCGGCGGuGCGGCGGGa -3' miRNA: 3'- -GGCGGGga----CCG---GCCGUU-CGCCGCCCa -5' |
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23721 | 3' | -66.4 | NC_005261.1 | + | 33581 | 0.72 | 0.167601 |
Target: 5'- gCCaGCCCCgcgaGcaccaggggcggcGCCGGCGcgGGCGGCGGGg -3' miRNA: 3'- -GG-CGGGGa---C-------------CGGCCGU--UCGCCGCCCa -5' |
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23721 | 3' | -66.4 | NC_005261.1 | + | 77754 | 0.72 | 0.168 |
Target: 5'- -aGCCCCUacgcaGCCGG--GGCGGCGGGg -3' miRNA: 3'- ggCGGGGAc----CGGCCguUCGCCGCCCa -5' |
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23721 | 3' | -66.4 | NC_005261.1 | + | 27462 | 0.72 | 0.168 |
Target: 5'- gCCGCCCCgcggGGCgGGCAGGCccucccCGGGc -3' miRNA: 3'- -GGCGGGGa---CCGgCCGUUCGcc----GCCCa -5' |
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23721 | 3' | -66.4 | NC_005261.1 | + | 97655 | 0.73 | 0.156016 |
Target: 5'- gCCGCaCCUggggGGCCGGCGuccgcggGGCuugGGCGGGg -3' miRNA: 3'- -GGCG-GGGa---CCGGCCGU-------UCG---CCGCCCa -5' |
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23721 | 3' | -66.4 | NC_005261.1 | + | 98131 | 0.73 | 0.15527 |
Target: 5'- gCCGCggcaCCggcGGCCGucggcggcaaggccGCGGGCGGCGGGUg -3' miRNA: 3'- -GGCGg---GGa--CCGGC--------------CGUUCGCCGCCCA- -5' |
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23721 | 3' | -66.4 | NC_005261.1 | + | 127297 | 0.73 | 0.149058 |
Target: 5'- -aGCCCUccccGCCGGCuGGCGGUGGGg -3' miRNA: 3'- ggCGGGGac--CGGCCGuUCGCCGCCCa -5' |
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23721 | 3' | -66.4 | NC_005261.1 | + | 21804 | 0.74 | 0.138646 |
Target: 5'- gCCGCCggCCgGGCCgGGCccGCGGCGGGc -3' miRNA: 3'- -GGCGG--GGaCCGG-CCGuuCGCCGCCCa -5' |
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23721 | 3' | -66.4 | NC_005261.1 | + | 134178 | 0.74 | 0.138646 |
Target: 5'- cCCGCUgcuugcggagggCCUGGCgCGGCucGGCGcGCGGGUc -3' miRNA: 3'- -GGCGG------------GGACCG-GCCGu-UCGC-CGCCCA- -5' |
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23721 | 3' | -66.4 | NC_005261.1 | + | 2717 | 0.73 | 0.141014 |
Target: 5'- -gGCCCCUGGCCccGGcCGAcuugcgcuugcgccGCGGCGGGc -3' miRNA: 3'- ggCGGGGACCGG--CC-GUU--------------CGCCGCCCa -5' |
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23721 | 3' | -66.4 | NC_005261.1 | + | 41535 | 0.73 | 0.14204 |
Target: 5'- cCCaGCCCC-GGCUGGCccguGGCGGUGcGGUa -3' miRNA: 3'- -GG-CGGGGaCCGGCCGu---UCGCCGC-CCA- -5' |
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23721 | 3' | -66.4 | NC_005261.1 | + | 103845 | 0.73 | 0.14204 |
Target: 5'- cUCGCCCUUGcGCgcgagccgCGGC-GGCGGCGGGg -3' miRNA: 3'- -GGCGGGGAC-CG--------GCCGuUCGCCGCCCa -5' |
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23721 | 3' | -66.4 | NC_005261.1 | + | 23766 | 0.73 | 0.145511 |
Target: 5'- uUGCCCCgggcgGGCCGGCuAG-GGUGGGc -3' miRNA: 3'- gGCGGGGa----CCGGCCGuUCgCCGCCCa -5' |
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23721 | 3' | -66.4 | NC_005261.1 | + | 23823 | 0.73 | 0.145511 |
Target: 5'- uUGCCCCgggcgGGCCGGCuAG-GGUGGGc -3' miRNA: 3'- gGCGGGGa----CCGGCCGuUCgCCGCCCa -5' |
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23721 | 3' | -66.4 | NC_005261.1 | + | 23880 | 0.73 | 0.145511 |
Target: 5'- uUGCCCCgggcgGGCCGGCuAG-GGUGGGc -3' miRNA: 3'- gGCGGGGa----CCGGCCGuUCgCCGCCCa -5' |
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23721 | 3' | -66.4 | NC_005261.1 | + | 97039 | 0.73 | 0.145511 |
Target: 5'- gCCGCCCacauccacaGGgCGGgGGGCGGCGGGc -3' miRNA: 3'- -GGCGGGga-------CCgGCCgUUCGCCGCCCa -5' |
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23721 | 3' | -66.4 | NC_005261.1 | + | 74441 | 0.73 | 0.145511 |
Target: 5'- gCGCCCCc--CCGGCGGGgGGUGGGg -3' miRNA: 3'- gGCGGGGaccGGCCGUUCgCCGCCCa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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