miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23721 5' -52.9 NC_005261.1 + 34478 0.66 0.970569
Target:  5'- cGUACCUgCggcgggUGCUGGAguGgGUcGAGGg -3'
miRNA:   3'- -CAUGGA-Ga-----GCGACCUguCgUAuCUCC- -5'
23721 5' -52.9 NC_005261.1 + 33812 0.66 0.960645
Target:  5'- -gGCUUgUCuuUGGGCGGCcgGGGGGc -3'
miRNA:   3'- caUGGAgAGcgACCUGUCGuaUCUCC- -5'
23721 5' -52.9 NC_005261.1 + 53029 0.66 0.956876
Target:  5'- -cGCUUC-CGCggcgccgGGGCAGCcgucgGGAGGg -3'
miRNA:   3'- caUGGAGaGCGa------CCUGUCGua---UCUCC- -5'
23721 5' -52.9 NC_005261.1 + 20834 0.66 0.956876
Target:  5'- -aACUgcgcgUUCGCggGGGCAGCGUGGcGGc -3'
miRNA:   3'- caUGGa----GAGCGa-CCUGUCGUAUCuCC- -5'
23721 5' -52.9 NC_005261.1 + 134555 0.68 0.917859
Target:  5'- -cGCCcCUUGCUGGGCGGCGccGcGGc -3'
miRNA:   3'- caUGGaGAGCGACCUGUCGUauCuCC- -5'
23721 5' -52.9 NC_005261.1 + 119273 0.68 0.905582
Target:  5'- --uCCUgCUCGCUGGGCGGgGgcucgccGAGGa -3'
miRNA:   3'- cauGGA-GAGCGACCUGUCgUau-----CUCC- -5'
23721 5' -52.9 NC_005261.1 + 43758 0.68 0.899069
Target:  5'- cGUGCCccugaaggugCUCGUgGGGCGGCGcgcGGAGGg -3'
miRNA:   3'- -CAUGGa---------GAGCGaCCUGUCGUa--UCUCC- -5'
23721 5' -52.9 NC_005261.1 + 123364 0.69 0.862897
Target:  5'- -cGCCUCUaUGCUGucCAGCG-AGAGGu -3'
miRNA:   3'- caUGGAGA-GCGACcuGUCGUaUCUCC- -5'
23721 5' -52.9 NC_005261.1 + 28002 0.7 0.821226
Target:  5'- -gGCCUCUcCGCgaaaggGGGcCGGCGgGGAGGa -3'
miRNA:   3'- caUGGAGA-GCGa-----CCU-GUCGUaUCUCC- -5'
23721 5' -52.9 NC_005261.1 + 6425 0.7 0.821226
Target:  5'- -gGCCUgCUCGCgaGGGCGGUccGGGGGc -3'
miRNA:   3'- caUGGA-GAGCGa-CCUGUCGuaUCUCC- -5'
23721 5' -52.9 NC_005261.1 + 33845 0.71 0.803223
Target:  5'- --cCCUggCGCUGGGCGGgCcgGGAGGg -3'
miRNA:   3'- cauGGAgaGCGACCUGUC-GuaUCUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.