miRNA display CGI


Results 1 - 20 of 99 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23722 3' -55.3 NC_005261.1 + 48158 0.66 0.917529
Target:  5'- cGAG-AGaGAGCGgugGCA-GCGggGGUGGa -3'
miRNA:   3'- -CUCgUC-CUCGCg--CGUaCGCuuCUACC- -5'
23722 3' -55.3 NC_005261.1 + 101153 0.66 0.917529
Target:  5'- -cGCGGcGGCGCGCcgccGCGAAGAg-- -3'
miRNA:   3'- cuCGUCcUCGCGCGua--CGCUUCUacc -5'
23722 3' -55.3 NC_005261.1 + 33018 0.66 0.917529
Target:  5'- gGGGgAGGGGgGCGCcgAUGCGGAGcguccgcGGa -3'
miRNA:   3'- -CUCgUCCUCgCGCG--UACGCUUCua-----CC- -5'
23722 3' -55.3 NC_005261.1 + 59953 0.66 0.916946
Target:  5'- -cGCAGcGcGGCGCGCGUGaacggguCGAAGAaGGc -3'
miRNA:   3'- cuCGUC-C-UCGCGCGUAC-------GCUUCUaCC- -5'
23722 3' -55.3 NC_005261.1 + 64185 0.66 0.915771
Target:  5'- cGGGCAGGcGaaaaGCGCGUGCaccggcgccggguaGAAGAaGGc -3'
miRNA:   3'- -CUCGUCCuCg---CGCGUACG--------------CUUCUaCC- -5'
23722 3' -55.3 NC_005261.1 + 15028 0.66 0.911582
Target:  5'- cGGCGGGugccgGGgGCGUA-GCGggGggGGu -3'
miRNA:   3'- cUCGUCC-----UCgCGCGUaCGCuuCuaCC- -5'
23722 3' -55.3 NC_005261.1 + 17734 0.66 0.911582
Target:  5'- gGAGCGgcgcucGGAGCGgGCGgacuucugggGCGguGGUGGc -3'
miRNA:   3'- -CUCGU------CCUCGCgCGUa---------CGCuuCUACC- -5'
23722 3' -55.3 NC_005261.1 + 14744 0.66 0.911582
Target:  5'- uGGCAGGGGCGaucggcgcCGCGccGCGAcAGggGGg -3'
miRNA:   3'- cUCGUCCUCGC--------GCGUa-CGCU-UCuaCC- -5'
23722 3' -55.3 NC_005261.1 + 58035 0.66 0.911582
Target:  5'- cAGCuccaGGGAGCGCggccGCGUGauguaGAGGGUGa -3'
miRNA:   3'- cUCG----UCCUCGCG----CGUACg----CUUCUACc -5'
23722 3' -55.3 NC_005261.1 + 74158 0.66 0.90539
Target:  5'- cAGCGGG-GCauGCGCGUGCucAAGGUGa -3'
miRNA:   3'- cUCGUCCuCG--CGCGUACGc-UUCUACc -5'
23722 3' -55.3 NC_005261.1 + 73486 0.66 0.90539
Target:  5'- -cGCGGcGcGGCGCGCGgacgcgGCGAGGAUc- -3'
miRNA:   3'- cuCGUC-C-UCGCGCGUa-----CGCUUCUAcc -5'
23722 3' -55.3 NC_005261.1 + 69316 0.66 0.904757
Target:  5'- cGGCGGGAGCGgGgGUGacggcgacagcgaCGGAGAcGGc -3'
miRNA:   3'- cUCGUCCUCGCgCgUAC-------------GCUUCUaCC- -5'
23722 3' -55.3 NC_005261.1 + 74456 0.66 0.904757
Target:  5'- gGGGUGGGGGCGCcgcccccggcgcgGCGUGCcuGGGcgGGa -3'
miRNA:   3'- -CUCGUCCUCGCG-------------CGUACGc-UUCuaCC- -5'
23722 3' -55.3 NC_005261.1 + 108451 0.66 0.898955
Target:  5'- cGAGCAGc-GCGuCGUcgGCGAGGAUc- -3'
miRNA:   3'- -CUCGUCcuCGC-GCGuaCGCUUCUAcc -5'
23722 3' -55.3 NC_005261.1 + 68598 0.66 0.898955
Target:  5'- -cGCGGGAGCggggccgacgGCGUggGgGAGGAUGc -3'
miRNA:   3'- cuCGUCCUCG----------CGCGuaCgCUUCUACc -5'
23722 3' -55.3 NC_005261.1 + 56005 0.66 0.898955
Target:  5'- cGGCGGGGGCGgGg--GCGggGAa-- -3'
miRNA:   3'- cUCGUCCUCGCgCguaCGCuuCUacc -5'
23722 3' -55.3 NC_005261.1 + 12579 0.66 0.89228
Target:  5'- gGGGCcgagAGGGGCGCcUA-GCGgAGGAUGGa -3'
miRNA:   3'- -CUCG----UCCUCGCGcGUaCGC-UUCUACC- -5'
23722 3' -55.3 NC_005261.1 + 13290 0.66 0.89228
Target:  5'- uGGCGGG-GCGCagGUGUGCGAcGggGGc -3'
miRNA:   3'- cUCGUCCuCGCG--CGUACGCUuCuaCC- -5'
23722 3' -55.3 NC_005261.1 + 36576 0.66 0.89228
Target:  5'- uGAGCGGGGGCccgcCGCGgccacCGggGggGGg -3'
miRNA:   3'- -CUCGUCCUCGc---GCGUac---GCuuCuaCC- -5'
23722 3' -55.3 NC_005261.1 + 99350 0.66 0.89228
Target:  5'- cAGCAGcAGCGCGCAcGUGAcGA-GGu -3'
miRNA:   3'- cUCGUCcUCGCGCGUaCGCUuCUaCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.