miRNA display CGI


Results 1 - 20 of 312 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23722 5' -66 NC_005261.1 + 34927 0.66 0.441013
Target:  5'- cGGCCACGCggggggcggccggcgCGaCCCgGGCccGGcGGCCu- -3'
miRNA:   3'- -CCGGUGCGa--------------GC-GGGgCCG--UC-CCGGua -5'
23722 5' -66 NC_005261.1 + 101719 0.66 0.440153
Target:  5'- aGCUGCGCcagCGCgCCCGcgauCAGGGCCu- -3'
miRNA:   3'- cCGGUGCGa--GCG-GGGCc---GUCCCGGua -5'
23722 5' -66 NC_005261.1 + 60203 0.66 0.440153
Target:  5'- aGuCCGCGCgcgCGCuCCCGccGCGGGGCg-- -3'
miRNA:   3'- cC-GGUGCGa--GCG-GGGC--CGUCCCGgua -5'
23722 5' -66 NC_005261.1 + 96470 0.66 0.440153
Target:  5'- aGGCCGCGCU--CCgCGGCugGGGGUgAUg -3'
miRNA:   3'- -CCGGUGCGAgcGGgGCCG--UCCCGgUA- -5'
23722 5' -66 NC_005261.1 + 83060 0.66 0.440153
Target:  5'- gGGCUcccUGCgCGCCCCcGCGGcGGCCGg -3'
miRNA:   3'- -CCGGu--GCGaGCGGGGcCGUC-CCGGUa -5'
23722 5' -66 NC_005261.1 + 87945 0.66 0.440153
Target:  5'- aGCCGCGCgcCGCCacggcccgCCGGCGgcGGGCUc- -3'
miRNA:   3'- cCGGUGCGa-GCGG--------GGCCGU--CCCGGua -5'
23722 5' -66 NC_005261.1 + 118939 0.66 0.440153
Target:  5'- cGCCGCGCggcugGCCgCGGCGcacGuGGCCAa -3'
miRNA:   3'- cCGGUGCGag---CGGgGCCGU---C-CCGGUa -5'
23722 5' -66 NC_005261.1 + 78077 0.66 0.440153
Target:  5'- cGGCCcagGCGCUgGCCCCcGCGccGGCCc- -3'
miRNA:   3'- -CCGG---UGCGAgCGGGGcCGUc-CCGGua -5'
23722 5' -66 NC_005261.1 + 135065 0.66 0.440153
Target:  5'- cGGCC-CGC-CGCUuuCCGGCGgcGGGCUc- -3'
miRNA:   3'- -CCGGuGCGaGCGG--GGCCGU--CCCGGua -5'
23722 5' -66 NC_005261.1 + 29277 0.66 0.440153
Target:  5'- gGGCC-CGCUgcugaCGCCcuCCGGCGaGGCCu- -3'
miRNA:   3'- -CCGGuGCGA-----GCGG--GGCCGUcCCGGua -5'
23722 5' -66 NC_005261.1 + 88588 0.66 0.440153
Target:  5'- cGCCGCcgagGCcCGgCCCGGCGGcGCCAc -3'
miRNA:   3'- cCGGUG----CGaGCgGGGCCGUCcCGGUa -5'
23722 5' -66 NC_005261.1 + 127800 0.66 0.440153
Target:  5'- gGGCCgGCGC-CGCggCGGC-GGGCCGc -3'
miRNA:   3'- -CCGG-UGCGaGCGggGCCGuCCCGGUa -5'
23722 5' -66 NC_005261.1 + 97459 0.66 0.439294
Target:  5'- cGGCgGCGCcgggaUCGCCaaaaccgUCGGgGGGGCCc- -3'
miRNA:   3'- -CCGgUGCG-----AGCGG-------GGCCgUCCCGGua -5'
23722 5' -66 NC_005261.1 + 31323 0.66 0.439294
Target:  5'- cGGgCGCGCUCGCCgCCagcgcgccgcugcGGCGGcgcguGGCCu- -3'
miRNA:   3'- -CCgGUGCGAGCGG-GG-------------CCGUC-----CCGGua -5'
23722 5' -66 NC_005261.1 + 39488 0.66 0.437579
Target:  5'- cGCCGCGgacgaugaucgcccCUCGCCCgaagaGGCccGGGCCGc -3'
miRNA:   3'- cCGGUGC--------------GAGCGGGg----CCGu-CCCGGUa -5'
23722 5' -66 NC_005261.1 + 132702 0.66 0.435014
Target:  5'- uGGCCGUGCcCGUCCCGGCgcccuaccucauugcGGcGGCCc- -3'
miRNA:   3'- -CCGGUGCGaGCGGGGCCG---------------UC-CCGGua -5'
23722 5' -66 NC_005261.1 + 48210 0.66 0.433309
Target:  5'- gGGCCggcgcgcguuucagaGCGCgcaaaagucuacCGCCCCcgcagcGCGGGGCCAa -3'
miRNA:   3'- -CCGG---------------UGCGa-----------GCGGGGc-----CGUCCCGGUa -5'
23722 5' -66 NC_005261.1 + 103291 0.66 0.431607
Target:  5'- uGCCGCGCgcaGCCCCGcgaagcccuGCAGcGGCa-- -3'
miRNA:   3'- cCGGUGCGag-CGGGGC---------CGUC-CCGgua -5'
23722 5' -66 NC_005261.1 + 124735 0.66 0.431607
Target:  5'- -aCCACGCUCcucuCCCCGcagccGCAGcGGCCGc -3'
miRNA:   3'- ccGGUGCGAGc---GGGGC-----CGUC-CCGGUa -5'
23722 5' -66 NC_005261.1 + 81508 0.66 0.431607
Target:  5'- cGGCgCGCGCgcCGCCgCCGGCgccAGGcGCUg- -3'
miRNA:   3'- -CCG-GUGCGa-GCGG-GGCCG---UCC-CGGua -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.