Results 61 - 70 of 70 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
23723 | 3' | -52.1 | NC_005261.1 | + | 53096 | 0.66 | 0.977252 |
Target: 5'- aGGAAGGCacgcagcgccGCGgcgCUGCGCg--CCGCc -3' miRNA: 3'- -CCUUCCGa---------UGCaa-GACGUGgaaGGCG- -5' |
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23723 | 3' | -52.1 | NC_005261.1 | + | 62211 | 0.66 | 0.977252 |
Target: 5'- cGAGGGUgcgcGCGgccgcgUCUGCGCCc-UCGCg -3' miRNA: 3'- cCUUCCGa---UGCa-----AGACGUGGaaGGCG- -5' |
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23723 | 3' | -52.1 | NC_005261.1 | + | 44116 | 0.66 | 0.979618 |
Target: 5'- uGGAGGGCUACG-UCaGCAaCCUcUUCa- -3' miRNA: 3'- -CCUUCCGAUGCaAGaCGU-GGA-AGGcg -5' |
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23723 | 3' | -52.1 | NC_005261.1 | + | 29936 | 0.66 | 0.979618 |
Target: 5'- cGGAc-GCUGCG--CUGCGgCCUgCCGCg -3' miRNA: 3'- -CCUucCGAUGCaaGACGU-GGAaGGCG- -5' |
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23723 | 3' | -52.1 | NC_005261.1 | + | 76596 | 0.66 | 0.979618 |
Target: 5'- cGGguGGCgcGCGcgCUGcCGCCcgCCGCc -3' miRNA: 3'- -CCuuCCGa-UGCaaGAC-GUGGaaGGCG- -5' |
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23723 | 3' | -52.1 | NC_005261.1 | + | 33368 | 0.66 | 0.981586 |
Target: 5'- cGGGccgcgccGGGCUGCGggCcGCcgcaGCCgccgCCGCa -3' miRNA: 3'- -CCU-------UCCGAUGCaaGaCG----UGGaa--GGCG- -5' |
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23723 | 3' | -52.1 | NC_005261.1 | + | 33946 | 0.66 | 0.981795 |
Target: 5'- aGGAuGGCgcCGccugucgCUGgACCUUCUGCc -3' miRNA: 3'- -CCUuCCGauGCaa-----GACgUGGAAGGCG- -5' |
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23723 | 3' | -52.1 | NC_005261.1 | + | 98000 | 0.66 | 0.981795 |
Target: 5'- uGGGAGGCgGCGggg-GCGCUggCgGCg -3' miRNA: 3'- -CCUUCCGaUGCaagaCGUGGaaGgCG- -5' |
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23723 | 3' | -52.1 | NC_005261.1 | + | 118188 | 0.66 | 0.981795 |
Target: 5'- --uGGGCcGCGggCcccGCGCCUgCCGCg -3' miRNA: 3'- ccuUCCGaUGCaaGa--CGUGGAaGGCG- -5' |
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23723 | 3' | -52.1 | NC_005261.1 | + | 112932 | 0.66 | 0.985621 |
Target: 5'- cGAGGGCgGCGcgCU-CGCCUUcgacuucgCCGCg -3' miRNA: 3'- cCUUCCGaUGCaaGAcGUGGAA--------GGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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