Results 61 - 70 of 70 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
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| Predicted miRNA align pattern | |||||||
| 23723 | 3' | -52.1 | NC_005261.1 | + | 102586 | 0.66 | 0.983793 |
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Target: 5'- cGucGGCgGCc-UCgcccGCGCCUUCCGCg -3' miRNA: 3'- cCuuCCGaUGcaAGa---CGUGGAAGGCG- -5' |
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| 23723 | 3' | -52.1 | NC_005261.1 | + | 97167 | 0.66 | 0.983793 |
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Target: 5'- cGGccGGCUGgGUcgCggGCGCCggccgggCCGCg -3' miRNA: 3'- -CCuuCCGAUgCAa-Ga-CGUGGaa-----GGCG- -5' |
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| 23723 | 3' | -52.1 | NC_005261.1 | + | 89607 | 0.66 | 0.983793 |
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Target: 5'- cGAcGGCUACGggaagCUgaaccgcggcgGCGUCUUCCGCg -3' miRNA: 3'- cCUuCCGAUGCaa---GA-----------CGUGGAAGGCG- -5' |
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| 23723 | 3' | -52.1 | NC_005261.1 | + | 83799 | 0.66 | 0.983793 |
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Target: 5'- uGGAAGuugUACG-UCUGCACCUgcCCGa -3' miRNA: 3'- -CCUUCcg-AUGCaAGACGUGGAa-GGCg -5' |
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| 23723 | 3' | -52.1 | NC_005261.1 | + | 58088 | 0.66 | 0.983793 |
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Target: 5'- -cAGGGCccGCGUccUCgggcgGCACCagCCGCg -3' miRNA: 3'- ccUUCCGa-UGCA--AGa----CGUGGaaGGCG- -5' |
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| 23723 | 3' | -52.1 | NC_005261.1 | + | 34643 | 0.66 | 0.983793 |
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Target: 5'- aGGAGGCccccGCGUUCgUGCGCagcCUGCu -3' miRNA: 3'- cCUUCCGa---UGCAAG-ACGUGgaaGGCG- -5' |
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| 23723 | 3' | -52.1 | NC_005261.1 | + | 76304 | 0.66 | 0.985621 |
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Target: 5'- --uGGGCUuCGUgccgCUGUucACCU-CCGCg -3' miRNA: 3'- ccuUCCGAuGCAa---GACG--UGGAaGGCG- -5' |
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| 23723 | 3' | -52.1 | NC_005261.1 | + | 53135 | 0.66 | 0.985621 |
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Target: 5'- aGGgcGGCgUACGcgC-GCGCCgucgcgCCGCc -3' miRNA: 3'- -CCuuCCG-AUGCaaGaCGUGGaa----GGCG- -5' |
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| 23723 | 3' | -52.1 | NC_005261.1 | + | 70455 | 0.66 | 0.985621 |
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Target: 5'- uGGAGGGUgUACG-UCaGC-CCgcgCCGCg -3' miRNA: 3'- -CCUUCCG-AUGCaAGaCGuGGaa-GGCG- -5' |
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| 23723 | 3' | -52.1 | NC_005261.1 | + | 112932 | 0.66 | 0.985621 |
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Target: 5'- cGAGGGCgGCGcgCU-CGCCUUcgacuucgCCGCg -3' miRNA: 3'- cCUUCCGaUGCaaGAcGUGGAA--------GGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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