miRNA display CGI


Results 21 - 40 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23723 3' -52.1 NC_005261.1 + 53523 0.67 0.958307
Target:  5'- cGAAGGCUGuggcugcCGUgUUGCGCuCUUCgGCc -3'
miRNA:   3'- cCUUCCGAU-------GCAaGACGUG-GAAGgCG- -5'
23723 3' -52.1 NC_005261.1 + 58088 0.66 0.983793
Target:  5'- -cAGGGCccGCGUccUCgggcgGCACCagCCGCg -3'
miRNA:   3'- ccUUCCGa-UGCA--AGa----CGUGGaaGGCG- -5'
23723 3' -52.1 NC_005261.1 + 60175 0.69 0.93065
Target:  5'- uGGAAGcGCg----UCUGCGCCgcggcggagaagUCCGCg -3'
miRNA:   3'- -CCUUC-CGaugcaAGACGUGGa-----------AGGCG- -5'
23723 3' -52.1 NC_005261.1 + 61873 0.67 0.962334
Target:  5'- aGAGGGCaccACGauggGCGCCUUCuCGCc -3'
miRNA:   3'- cCUUCCGa--UGCaagaCGUGGAAG-GCG- -5'
23723 3' -52.1 NC_005261.1 + 62211 0.66 0.977252
Target:  5'- cGAGGGUgcgcGCGgccgcgUCUGCGCCc-UCGCg -3'
miRNA:   3'- cCUUCCGa---UGCa-----AGACGUGGaaGGCG- -5'
23723 3' -52.1 NC_005261.1 + 63141 0.73 0.764657
Target:  5'- cGGggGGCUGCuugaaCUGCAgCUccguguccgacgugcUCCGCg -3'
miRNA:   3'- -CCuuCCGAUGcaa--GACGUgGA---------------AGGCG- -5'
23723 3' -52.1 NC_005261.1 + 70455 0.66 0.985621
Target:  5'- uGGAGGGUgUACG-UCaGC-CCgcgCCGCg -3'
miRNA:   3'- -CCUUCCG-AUGCaAGaCGuGGaa-GGCG- -5'
23723 3' -52.1 NC_005261.1 + 70648 0.66 0.981795
Target:  5'- ---cGGCgcugAgGUUCgGCGCCgcggCCGCg -3'
miRNA:   3'- ccuuCCGa---UgCAAGaCGUGGaa--GGCG- -5'
23723 3' -52.1 NC_005261.1 + 74055 0.76 0.584966
Target:  5'- cGGggGGCUGCGgcagCUGCGCga--CGCg -3'
miRNA:   3'- -CCuuCCGAUGCaa--GACGUGgaagGCG- -5'
23723 3' -52.1 NC_005261.1 + 76304 0.66 0.985621
Target:  5'- --uGGGCUuCGUgccgCUGUucACCU-CCGCg -3'
miRNA:   3'- ccuUCCGAuGCAa---GACG--UGGAaGGCG- -5'
23723 3' -52.1 NC_005261.1 + 76596 0.66 0.979618
Target:  5'- cGGguGGCgcGCGcgCUGcCGCCcgCCGCc -3'
miRNA:   3'- -CCuuCCGa-UGCaaGAC-GUGGaaGGCG- -5'
23723 3' -52.1 NC_005261.1 + 82180 0.68 0.950248
Target:  5'- cGGAAGGCgcgGCGUgcgcagaagccguUgUGCACCgccaCGUa -3'
miRNA:   3'- -CCUUCCGa--UGCA-------------AgACGUGGaag-GCG- -5'
23723 3' -52.1 NC_005261.1 + 83799 0.66 0.983793
Target:  5'- uGGAAGuugUACG-UCUGCACCUgcCCGa -3'
miRNA:   3'- -CCUUCcg-AUGCaAGACGUGGAa-GGCg -5'
23723 3' -52.1 NC_005261.1 + 85546 0.67 0.968948
Target:  5'- cGGgcGGCUcCG-UCUGCGgCg-CCGCg -3'
miRNA:   3'- -CCuuCCGAuGCaAGACGUgGaaGGCG- -5'
23723 3' -52.1 NC_005261.1 + 87897 0.67 0.968948
Target:  5'- aGAGGGCgggccggGCGUaccgugugUCUGCcgccacccgggGCCUggagCCGCg -3'
miRNA:   3'- cCUUCCGa------UGCA--------AGACG-----------UGGAa---GGCG- -5'
23723 3' -52.1 NC_005261.1 + 88325 0.71 0.859035
Target:  5'- gGGGAGGCUGCaaggCUggcgGCGCCccgCCGCc -3'
miRNA:   3'- -CCUUCCGAUGcaa-GA----CGUGGaa-GGCG- -5'
23723 3' -52.1 NC_005261.1 + 89607 0.66 0.983793
Target:  5'- cGAcGGCUACGggaagCUgaaccgcggcgGCGUCUUCCGCg -3'
miRNA:   3'- cCUuCCGAUGCaa---GA-----------CGUGGAAGGCG- -5'
23723 3' -52.1 NC_005261.1 + 90440 0.7 0.895707
Target:  5'- gGGcGGGC-GCGcgCUGCACUUUgUGCg -3'
miRNA:   3'- -CCuUCCGaUGCaaGACGUGGAAgGCG- -5'
23723 3' -52.1 NC_005261.1 + 91539 0.7 0.881736
Target:  5'- aGGAcccGGGCUACGcgC-GCGCCcgcgCCGUg -3'
miRNA:   3'- -CCU---UCCGAUGCaaGaCGUGGaa--GGCG- -5'
23723 3' -52.1 NC_005261.1 + 93913 0.69 0.926333
Target:  5'- cGGGcgcGGCgcccGCGggCuUGCGCCgUCCGCg -3'
miRNA:   3'- -CCUu--CCGa---UGCaaG-ACGUGGaAGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.