miRNA display CGI


Results 61 - 70 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23723 3' -52.1 NC_005261.1 + 116932 0.68 0.941688
Target:  5'- --cGGGCUGCug---GaCGCCUUCCGCg -3'
miRNA:   3'- ccuUCCGAUGcaagaC-GUGGAAGGCG- -5'
23723 3' -52.1 NC_005261.1 + 117187 0.66 0.97469
Target:  5'- cGGcGGGGCggugACGUUCUccuaccggcGCGCCcgCUGCc -3'
miRNA:   3'- -CC-UUCCGa---UGCAAGA---------CGUGGaaGGCG- -5'
23723 3' -52.1 NC_005261.1 + 117549 0.68 0.953587
Target:  5'- cGGAgGGGCUGaccgUGUUCUuuuucugccgccccGCGCCcgCCGCu -3'
miRNA:   3'- -CCU-UCCGAU----GCAAGA--------------CGUGGaaGGCG- -5'
23723 3' -52.1 NC_005261.1 + 118188 0.66 0.981795
Target:  5'- --uGGGCcGCGggCcccGCGCCUgCCGCg -3'
miRNA:   3'- ccuUCCGaUGCaaGa--CGUGGAaGGCG- -5'
23723 3' -52.1 NC_005261.1 + 118386 0.66 0.981795
Target:  5'- cGGcccGAGGCgcugGCGgcCgcggGCGCCgcagCCGCg -3'
miRNA:   3'- -CC---UUCCGa---UGCaaGa---CGUGGaa--GGCG- -5'
23723 3' -52.1 NC_005261.1 + 120423 0.66 0.97469
Target:  5'- cGGccuGGGCUggugaacaugcGCGgcgUGCGCCUgcucUCCGCg -3'
miRNA:   3'- -CCu--UCCGA-----------UGCaagACGUGGA----AGGCG- -5'
23723 3' -52.1 NC_005261.1 + 124250 0.67 0.971925
Target:  5'- cGGGcAGGCgcCGcgCgGCGCCgcCCGCg -3'
miRNA:   3'- -CCU-UCCGauGCaaGaCGUGGaaGGCG- -5'
23723 3' -52.1 NC_005261.1 + 133567 0.66 0.983793
Target:  5'- cGGggGGCggACGgcua--ACCUUgCCGCg -3'
miRNA:   3'- -CCuuCCGa-UGCaagacgUGGAA-GGCG- -5'
23723 3' -52.1 NC_005261.1 + 134407 0.71 0.866827
Target:  5'- aGGAAGGUgUGCGUgaaCUGCugCUcCaCGCu -3'
miRNA:   3'- -CCUUCCG-AUGCAa--GACGugGAaG-GCG- -5'
23723 3' -52.1 NC_005261.1 + 137992 0.67 0.958685
Target:  5'- cGgcGGCUGCGgcggcggCUGCGgCggcCCGCa -3'
miRNA:   3'- cCuuCCGAUGCaa-----GACGUgGaa-GGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.