Results 21 - 40 of 70 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23723 | 3' | -52.1 | NC_005261.1 | + | 99564 | 0.69 | 0.908706 |
Target: 5'- aGGAAGGCguCGUagcUCUGgGCCUg-CGCg -3' miRNA: 3'- -CCUUCCGauGCA---AGACgUGGAagGCG- -5' |
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23723 | 3' | -52.1 | NC_005261.1 | + | 98000 | 0.66 | 0.981795 |
Target: 5'- uGGGAGGCgGCGggg-GCGCUggCgGCg -3' miRNA: 3'- -CCUUCCGaUGCaagaCGUGGaaGgCG- -5' |
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23723 | 3' | -52.1 | NC_005261.1 | + | 97903 | 0.66 | 0.97469 |
Target: 5'- cGGAccgucuGGGCgccggGCGUccccgCUGUACUggCCGCc -3' miRNA: 3'- -CCU------UCCGa----UGCAa----GACGUGGaaGGCG- -5' |
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23723 | 3' | -52.1 | NC_005261.1 | + | 97842 | 0.67 | 0.962334 |
Target: 5'- cGggGGCgGCGg---GCGCCg-CCGCg -3' miRNA: 3'- cCuuCCGaUGCaagaCGUGGaaGGCG- -5' |
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23723 | 3' | -52.1 | NC_005261.1 | + | 97639 | 0.67 | 0.971925 |
Target: 5'- cGGAgcGGGC-GCGggugCcGCACCUggggggccggcgUCCGCg -3' miRNA: 3'- -CCU--UCCGaUGCaa--GaCGUGGA------------AGGCG- -5' |
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23723 | 3' | -52.1 | NC_005261.1 | + | 97487 | 0.67 | 0.962334 |
Target: 5'- gGGggGGCccUugGgg--GCGCCggggCCGCc -3' miRNA: 3'- -CCuuCCG--AugCaagaCGUGGaa--GGCG- -5' |
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23723 | 3' | -52.1 | NC_005261.1 | + | 97167 | 0.66 | 0.983793 |
Target: 5'- cGGccGGCUGgGUcgCggGCGCCggccgggCCGCg -3' miRNA: 3'- -CCuuCCGAUgCAa-Ga-CGUGGaa-----GGCG- -5' |
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23723 | 3' | -52.1 | NC_005261.1 | + | 97058 | 0.74 | 0.67943 |
Target: 5'- cGGggGGCgGCGg---GCACgaUCCGCg -3' miRNA: 3'- -CCuuCCGaUGCaagaCGUGgaAGGCG- -5' |
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23723 | 3' | -52.1 | NC_005261.1 | + | 96858 | 0.72 | 0.80252 |
Target: 5'- cGGggGGCUcggggggcgcggguaGCGUgcggaUCcGCGCCUcggcgUCCGCc -3' miRNA: 3'- -CCuuCCGA---------------UGCA-----AGaCGUGGA-----AGGCG- -5' |
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23723 | 3' | -52.1 | NC_005261.1 | + | 95771 | 0.66 | 0.97469 |
Target: 5'- cGGGAGcCUcGCGcgCUGCGCCggCgCGCu -3' miRNA: 3'- -CCUUCcGA-UGCaaGACGUGGaaG-GCG- -5' |
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23723 | 3' | -52.1 | NC_005261.1 | + | 93913 | 0.69 | 0.926333 |
Target: 5'- cGGGcgcGGCgcccGCGggCuUGCGCCgUCCGCg -3' miRNA: 3'- -CCUu--CCGa---UGCaaG-ACGUGGaAGGCG- -5' |
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23723 | 3' | -52.1 | NC_005261.1 | + | 91539 | 0.7 | 0.881736 |
Target: 5'- aGGAcccGGGCUACGcgC-GCGCCcgcgCCGUg -3' miRNA: 3'- -CCU---UCCGAUGCaaGaCGUGGaa--GGCG- -5' |
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23723 | 3' | -52.1 | NC_005261.1 | + | 90440 | 0.7 | 0.895707 |
Target: 5'- gGGcGGGC-GCGcgCUGCACUUUgUGCg -3' miRNA: 3'- -CCuUCCGaUGCaaGACGUGGAAgGCG- -5' |
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23723 | 3' | -52.1 | NC_005261.1 | + | 89607 | 0.66 | 0.983793 |
Target: 5'- cGAcGGCUACGggaagCUgaaccgcggcgGCGUCUUCCGCg -3' miRNA: 3'- cCUuCCGAUGCaa---GA-----------CGUGGAAGGCG- -5' |
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23723 | 3' | -52.1 | NC_005261.1 | + | 88325 | 0.71 | 0.859035 |
Target: 5'- gGGGAGGCUGCaaggCUggcgGCGCCccgCCGCc -3' miRNA: 3'- -CCUUCCGAUGcaa-GA----CGUGGaa-GGCG- -5' |
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23723 | 3' | -52.1 | NC_005261.1 | + | 87897 | 0.67 | 0.968948 |
Target: 5'- aGAGGGCgggccggGCGUaccgugugUCUGCcgccacccgggGCCUggagCCGCg -3' miRNA: 3'- cCUUCCGa------UGCA--------AGACG-----------UGGAa---GGCG- -5' |
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23723 | 3' | -52.1 | NC_005261.1 | + | 85546 | 0.67 | 0.968948 |
Target: 5'- cGGgcGGCUcCG-UCUGCGgCg-CCGCg -3' miRNA: 3'- -CCuuCCGAuGCaAGACGUgGaaGGCG- -5' |
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23723 | 3' | -52.1 | NC_005261.1 | + | 83799 | 0.66 | 0.983793 |
Target: 5'- uGGAAGuugUACG-UCUGCACCUgcCCGa -3' miRNA: 3'- -CCUUCcg-AUGCaAGACGUGGAa-GGCg -5' |
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23723 | 3' | -52.1 | NC_005261.1 | + | 82180 | 0.68 | 0.950248 |
Target: 5'- cGGAAGGCgcgGCGUgcgcagaagccguUgUGCACCgccaCGUa -3' miRNA: 3'- -CCUUCCGa--UGCA-------------AgACGUGGaag-GCG- -5' |
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23723 | 3' | -52.1 | NC_005261.1 | + | 76596 | 0.66 | 0.979618 |
Target: 5'- cGGguGGCgcGCGcgCUGcCGCCcgCCGCc -3' miRNA: 3'- -CCuuCCGa-UGCaaGAC-GUGGaaGGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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