Results 41 - 60 of 70 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23723 | 3' | -52.1 | NC_005261.1 | + | 76304 | 0.66 | 0.985621 |
Target: 5'- --uGGGCUuCGUgccgCUGUucACCU-CCGCg -3' miRNA: 3'- ccuUCCGAuGCAa---GACG--UGGAaGGCG- -5' |
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23723 | 3' | -52.1 | NC_005261.1 | + | 74055 | 0.76 | 0.584966 |
Target: 5'- cGGggGGCUGCGgcagCUGCGCga--CGCg -3' miRNA: 3'- -CCuuCCGAUGCaa--GACGUGgaagGCG- -5' |
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23723 | 3' | -52.1 | NC_005261.1 | + | 70648 | 0.66 | 0.981795 |
Target: 5'- ---cGGCgcugAgGUUCgGCGCCgcggCCGCg -3' miRNA: 3'- ccuuCCGa---UgCAAGaCGUGGaa--GGCG- -5' |
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23723 | 3' | -52.1 | NC_005261.1 | + | 70455 | 0.66 | 0.985621 |
Target: 5'- uGGAGGGUgUACG-UCaGC-CCgcgCCGCg -3' miRNA: 3'- -CCUUCCG-AUGCaAGaCGuGGaa-GGCG- -5' |
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23723 | 3' | -52.1 | NC_005261.1 | + | 63141 | 0.73 | 0.764657 |
Target: 5'- cGGggGGCUGCuugaaCUGCAgCUccguguccgacgugcUCCGCg -3' miRNA: 3'- -CCuuCCGAUGcaa--GACGUgGA---------------AGGCG- -5' |
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23723 | 3' | -52.1 | NC_005261.1 | + | 62211 | 0.66 | 0.977252 |
Target: 5'- cGAGGGUgcgcGCGgccgcgUCUGCGCCc-UCGCg -3' miRNA: 3'- cCUUCCGa---UGCa-----AGACGUGGaaGGCG- -5' |
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23723 | 3' | -52.1 | NC_005261.1 | + | 61873 | 0.67 | 0.962334 |
Target: 5'- aGAGGGCaccACGauggGCGCCUUCuCGCc -3' miRNA: 3'- cCUUCCGa--UGCaagaCGUGGAAG-GCG- -5' |
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23723 | 3' | -52.1 | NC_005261.1 | + | 60175 | 0.69 | 0.93065 |
Target: 5'- uGGAAGcGCg----UCUGCGCCgcggcggagaagUCCGCg -3' miRNA: 3'- -CCUUC-CGaugcaAGACGUGGa-----------AGGCG- -5' |
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23723 | 3' | -52.1 | NC_005261.1 | + | 58088 | 0.66 | 0.983793 |
Target: 5'- -cAGGGCccGCGUccUCgggcgGCACCagCCGCg -3' miRNA: 3'- ccUUCCGa-UGCA--AGa----CGUGGaaGGCG- -5' |
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23723 | 3' | -52.1 | NC_005261.1 | + | 53523 | 0.67 | 0.958307 |
Target: 5'- cGAAGGCUGuggcugcCGUgUUGCGCuCUUCgGCc -3' miRNA: 3'- cCUUCCGAU-------GCAaGACGUG-GAAGgCG- -5' |
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23723 | 3' | -52.1 | NC_005261.1 | + | 53321 | 0.69 | 0.926333 |
Target: 5'- aGGAGGCcgcaggugUGCGccUCUGCGCCcgcccccgCCGCg -3' miRNA: 3'- cCUUCCG--------AUGCa-AGACGUGGaa------GGCG- -5' |
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23723 | 3' | -52.1 | NC_005261.1 | + | 53135 | 0.66 | 0.985621 |
Target: 5'- aGGgcGGCgUACGcgC-GCGCCgucgcgCCGCc -3' miRNA: 3'- -CCuuCCG-AUGCaaGaCGUGGaa----GGCG- -5' |
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23723 | 3' | -52.1 | NC_005261.1 | + | 53096 | 0.66 | 0.977252 |
Target: 5'- aGGAAGGCacgcagcgccGCGgcgCUGCGCg--CCGCc -3' miRNA: 3'- -CCUUCCGa---------UGCaa-GACGUGgaaGGCG- -5' |
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23723 | 3' | -52.1 | NC_005261.1 | + | 45415 | 0.67 | 0.965754 |
Target: 5'- ----uGCUGCGgcgcCUGCGCCcgCCGCc -3' miRNA: 3'- ccuucCGAUGCaa--GACGUGGaaGGCG- -5' |
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23723 | 3' | -52.1 | NC_005261.1 | + | 44116 | 0.66 | 0.979618 |
Target: 5'- uGGAGGGCUACG-UCaGCAaCCUcUUCa- -3' miRNA: 3'- -CCUUCCGAUGCaAGaCGU-GGA-AGGcg -5' |
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23723 | 3' | -52.1 | NC_005261.1 | + | 43808 | 0.67 | 0.965754 |
Target: 5'- aGggGGCgcCGggC-GCGCCcUCCGUg -3' miRNA: 3'- cCuuCCGauGCaaGaCGUGGaAGGCG- -5' |
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23723 | 3' | -52.1 | NC_005261.1 | + | 36603 | 0.69 | 0.931704 |
Target: 5'- gGGggGGCaGCGcucCUGCGCCccggCGCa -3' miRNA: 3'- -CCuuCCGaUGCaa-GACGUGGaag-GCG- -5' |
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23723 | 3' | -52.1 | NC_005261.1 | + | 34643 | 0.66 | 0.983793 |
Target: 5'- aGGAGGCccccGCGUUCgUGCGCagcCUGCu -3' miRNA: 3'- cCUUCCGa---UGCAAG-ACGUGgaaGGCG- -5' |
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23723 | 3' | -52.1 | NC_005261.1 | + | 33946 | 0.66 | 0.981795 |
Target: 5'- aGGAuGGCgcCGccugucgCUGgACCUUCUGCc -3' miRNA: 3'- -CCUuCCGauGCaa-----GACgUGGAAGGCG- -5' |
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23723 | 3' | -52.1 | NC_005261.1 | + | 33368 | 0.66 | 0.981586 |
Target: 5'- cGGGccgcgccGGGCUGCGggCcGCcgcaGCCgccgCCGCa -3' miRNA: 3'- -CCU-------UCCGAUGCaaGaCG----UGGaa--GGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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