miRNA display CGI


Results 61 - 70 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23723 3' -52.1 NC_005261.1 + 32201 0.67 0.964752
Target:  5'- uGGAGcuGGCgcccgACGagCUGCcggccgcggcggugGCCUUCUGCg -3'
miRNA:   3'- -CCUU--CCGa----UGCaaGACG--------------UGGAAGGCG- -5'
23723 3' -52.1 NC_005261.1 + 32108 0.69 0.92071
Target:  5'- cGGAGGGCgagGCGgcCaGcCACCgcgCCGCc -3'
miRNA:   3'- -CCUUCCGa--UGCaaGaC-GUGGaa-GGCG- -5'
23723 3' -52.1 NC_005261.1 + 31756 0.66 0.981795
Target:  5'- cGGGcAGGCgcACGUguacCUGCGCg--CCGCg -3'
miRNA:   3'- -CCU-UCCGa-UGCAa---GACGUGgaaGGCG- -5'
23723 3' -52.1 NC_005261.1 + 30702 0.68 0.936822
Target:  5'- gGGGAGGCccGCGggagCcccgGCGCCgggCCGCc -3'
miRNA:   3'- -CCUUCCGa-UGCaa--Ga---CGUGGaa-GGCG- -5'
23723 3' -52.1 NC_005261.1 + 29936 0.66 0.979618
Target:  5'- cGGAc-GCUGCG--CUGCGgCCUgCCGCg -3'
miRNA:   3'- -CCUucCGAUGCaaGACGU-GGAaGGCG- -5'
23723 3' -52.1 NC_005261.1 + 21384 0.67 0.973056
Target:  5'- cGGAGGCgcgguccacuuugagUGCGUUCccGCGCCgcgCCGg -3'
miRNA:   3'- cCUUCCG---------------AUGCAAGa-CGUGGaa-GGCg -5'
23723 3' -52.1 NC_005261.1 + 20562 0.7 0.90233
Target:  5'- cGGcGGGCUGCGcagCgGCGCCggCgGCg -3'
miRNA:   3'- -CCuUCCGAUGCaa-GaCGUGGaaGgCG- -5'
23723 3' -52.1 NC_005261.1 + 14741 0.66 0.981795
Target:  5'- cGGu-GGCagggGCGaUCgGCGCCgcgCCGCg -3'
miRNA:   3'- -CCuuCCGa---UGCaAGaCGUGGaa-GGCG- -5'
23723 3' -52.1 NC_005261.1 + 3832 0.67 0.968948
Target:  5'- cGGGcccGGGCgcugGCGgcagCgGCGCCggcgCCGCg -3'
miRNA:   3'- -CCU---UCCGa---UGCaa--GaCGUGGaa--GGCG- -5'
23723 3' -52.1 NC_005261.1 + 321 0.67 0.958685
Target:  5'- cGgcGGCUGCGgcggcggCUGCGgCggcCCGCa -3'
miRNA:   3'- cCuuCCGAUGCaa-----GACGUgGaa-GGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.