miRNA display CGI


Results 1 - 20 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23723 3' -52.1 NC_005261.1 + 31756 0.66 0.981795
Target:  5'- cGGGcAGGCgcACGUguacCUGCGCg--CCGCg -3'
miRNA:   3'- -CCU-UCCGa-UGCAa---GACGUGgaaGGCG- -5'
23723 3' -52.1 NC_005261.1 + 83799 0.66 0.983793
Target:  5'- uGGAAGuugUACG-UCUGCACCUgcCCGa -3'
miRNA:   3'- -CCUUCcg-AUGCaAGACGUGGAa-GGCg -5'
23723 3' -52.1 NC_005261.1 + 14741 0.66 0.981795
Target:  5'- cGGu-GGCagggGCGaUCgGCGCCgcgCCGCg -3'
miRNA:   3'- -CCuuCCGa---UGCaAGaCGUGGaa-GGCG- -5'
23723 3' -52.1 NC_005261.1 + 44116 0.66 0.979618
Target:  5'- uGGAGGGCUACG-UCaGCAaCCUcUUCa- -3'
miRNA:   3'- -CCUUCCGAUGCaAGaCGU-GGA-AGGcg -5'
23723 3' -52.1 NC_005261.1 + 62211 0.66 0.977252
Target:  5'- cGAGGGUgcgcGCGgccgcgUCUGCGCCc-UCGCg -3'
miRNA:   3'- cCUUCCGa---UGCa-----AGACGUGGaaGGCG- -5'
23723 3' -52.1 NC_005261.1 + 98000 0.66 0.981795
Target:  5'- uGGGAGGCgGCGggg-GCGCUggCgGCg -3'
miRNA:   3'- -CCUUCCGaUGCaagaCGUGGaaGgCG- -5'
23723 3' -52.1 NC_005261.1 + 33368 0.66 0.981586
Target:  5'- cGGGccgcgccGGGCUGCGggCcGCcgcaGCCgccgCCGCa -3'
miRNA:   3'- -CCU-------UCCGAUGCaaGaCG----UGGaa--GGCG- -5'
23723 3' -52.1 NC_005261.1 + 118188 0.66 0.981795
Target:  5'- --uGGGCcGCGggCcccGCGCCUgCCGCg -3'
miRNA:   3'- ccuUCCGaUGCaaGa--CGUGGAaGGCG- -5'
23723 3' -52.1 NC_005261.1 + 95771 0.66 0.97469
Target:  5'- cGGGAGcCUcGCGcgCUGCGCCggCgCGCu -3'
miRNA:   3'- -CCUUCcGA-UGCaaGACGUGGaaG-GCG- -5'
23723 3' -52.1 NC_005261.1 + 112932 0.66 0.985621
Target:  5'- cGAGGGCgGCGcgCU-CGCCUUcgacuucgCCGCg -3'
miRNA:   3'- cCUUCCGaUGCaaGAcGUGGAA--------GGCG- -5'
23723 3' -52.1 NC_005261.1 + 118386 0.66 0.981795
Target:  5'- cGGcccGAGGCgcugGCGgcCgcggGCGCCgcagCCGCg -3'
miRNA:   3'- -CC---UUCCGa---UGCaaGa---CGUGGaa--GGCG- -5'
23723 3' -52.1 NC_005261.1 + 33946 0.66 0.981795
Target:  5'- aGGAuGGCgcCGccugucgCUGgACCUUCUGCc -3'
miRNA:   3'- -CCUuCCGauGCaa-----GACgUGGAAGGCG- -5'
23723 3' -52.1 NC_005261.1 + 117187 0.66 0.97469
Target:  5'- cGGcGGGGCggugACGUUCUccuaccggcGCGCCcgCUGCc -3'
miRNA:   3'- -CC-UUCCGa---UGCAAGA---------CGUGGaaGGCG- -5'
23723 3' -52.1 NC_005261.1 + 97903 0.66 0.97469
Target:  5'- cGGAccgucuGGGCgccggGCGUccccgCUGUACUggCCGCc -3'
miRNA:   3'- -CCU------UCCGa----UGCAa----GACGUGGaaGGCG- -5'
23723 3' -52.1 NC_005261.1 + 76596 0.66 0.979618
Target:  5'- cGGguGGCgcGCGcgCUGcCGCCcgCCGCc -3'
miRNA:   3'- -CCuuCCGa-UGCaaGAC-GUGGaaGGCG- -5'
23723 3' -52.1 NC_005261.1 + 58088 0.66 0.983793
Target:  5'- -cAGGGCccGCGUccUCgggcgGCACCagCCGCg -3'
miRNA:   3'- ccUUCCGa-UGCA--AGa----CGUGGaaGGCG- -5'
23723 3' -52.1 NC_005261.1 + 34643 0.66 0.983793
Target:  5'- aGGAGGCccccGCGUUCgUGCGCagcCUGCu -3'
miRNA:   3'- cCUUCCGa---UGCAAG-ACGUGgaaGGCG- -5'
23723 3' -52.1 NC_005261.1 + 29936 0.66 0.979618
Target:  5'- cGGAc-GCUGCG--CUGCGgCCUgCCGCg -3'
miRNA:   3'- -CCUucCGAUGCaaGACGU-GGAaGGCG- -5'
23723 3' -52.1 NC_005261.1 + 70648 0.66 0.981795
Target:  5'- ---cGGCgcugAgGUUCgGCGCCgcggCCGCg -3'
miRNA:   3'- ccuuCCGa---UgCAAGaCGUGGaa--GGCG- -5'
23723 3' -52.1 NC_005261.1 + 53096 0.66 0.977252
Target:  5'- aGGAAGGCacgcagcgccGCGgcgCUGCGCg--CCGCc -3'
miRNA:   3'- -CCUUCCGa---------UGCaa-GACGUGgaaGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.