miRNA display CGI


Results 21 - 40 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23723 3' -52.1 NC_005261.1 + 76596 0.66 0.979618
Target:  5'- cGGguGGCgcGCGcgCUGcCGCCcgCCGCc -3'
miRNA:   3'- -CCuuCCGa-UGCaaGAC-GUGGaaGGCG- -5'
23723 3' -52.1 NC_005261.1 + 29936 0.66 0.979618
Target:  5'- cGGAc-GCUGCG--CUGCGgCCUgCCGCg -3'
miRNA:   3'- -CCUucCGAUGCaaGACGU-GGAaGGCG- -5'
23723 3' -52.1 NC_005261.1 + 44116 0.66 0.979618
Target:  5'- uGGAGGGCUACG-UCaGCAaCCUcUUCa- -3'
miRNA:   3'- -CCUUCCGAUGCaAGaCGU-GGA-AGGcg -5'
23723 3' -52.1 NC_005261.1 + 62211 0.66 0.977252
Target:  5'- cGAGGGUgcgcGCGgccgcgUCUGCGCCc-UCGCg -3'
miRNA:   3'- cCUUCCGa---UGCa-----AGACGUGGaaGGCG- -5'
23723 3' -52.1 NC_005261.1 + 53096 0.66 0.977252
Target:  5'- aGGAAGGCacgcagcgccGCGgcgCUGCGCg--CCGCc -3'
miRNA:   3'- -CCUUCCGa---------UGCaa-GACGUGgaaGGCG- -5'
23723 3' -52.1 NC_005261.1 + 95771 0.66 0.97469
Target:  5'- cGGGAGcCUcGCGcgCUGCGCCggCgCGCu -3'
miRNA:   3'- -CCUUCcGA-UGCaaGACGUGGaaG-GCG- -5'
23723 3' -52.1 NC_005261.1 + 117187 0.66 0.97469
Target:  5'- cGGcGGGGCggugACGUUCUccuaccggcGCGCCcgCUGCc -3'
miRNA:   3'- -CC-UUCCGa---UGCAAGA---------CGUGGaaGGCG- -5'
23723 3' -52.1 NC_005261.1 + 120423 0.66 0.97469
Target:  5'- cGGccuGGGCUggugaacaugcGCGgcgUGCGCCUgcucUCCGCg -3'
miRNA:   3'- -CCu--UCCGA-----------UGCaagACGUGGA----AGGCG- -5'
23723 3' -52.1 NC_005261.1 + 97903 0.66 0.97469
Target:  5'- cGGAccgucuGGGCgccggGCGUccccgCUGUACUggCCGCc -3'
miRNA:   3'- -CCU------UCCGa----UGCAa----GACGUGGaaGGCG- -5'
23723 3' -52.1 NC_005261.1 + 21384 0.67 0.973056
Target:  5'- cGGAGGCgcgguccacuuugagUGCGUUCccGCGCCgcgCCGg -3'
miRNA:   3'- cCUUCCG---------------AUGCAAGa-CGUGGaa-GGCg -5'
23723 3' -52.1 NC_005261.1 + 97639 0.67 0.971925
Target:  5'- cGGAgcGGGC-GCGggugCcGCACCUggggggccggcgUCCGCg -3'
miRNA:   3'- -CCU--UCCGaUGCaa--GaCGUGGA------------AGGCG- -5'
23723 3' -52.1 NC_005261.1 + 124250 0.67 0.971925
Target:  5'- cGGGcAGGCgcCGcgCgGCGCCgcCCGCg -3'
miRNA:   3'- -CCU-UCCGauGCaaGaCGUGGaaGGCG- -5'
23723 3' -52.1 NC_005261.1 + 85546 0.67 0.968948
Target:  5'- cGGgcGGCUcCG-UCUGCGgCg-CCGCg -3'
miRNA:   3'- -CCuuCCGAuGCaAGACGUgGaaGGCG- -5'
23723 3' -52.1 NC_005261.1 + 3832 0.67 0.968948
Target:  5'- cGGGcccGGGCgcugGCGgcagCgGCGCCggcgCCGCg -3'
miRNA:   3'- -CCU---UCCGa---UGCaa--GaCGUGGaa--GGCG- -5'
23723 3' -52.1 NC_005261.1 + 87897 0.67 0.968948
Target:  5'- aGAGGGCgggccggGCGUaccgugugUCUGCcgccacccgggGCCUggagCCGCg -3'
miRNA:   3'- cCUUCCGa------UGCA--------AGACG-----------UGGAa---GGCG- -5'
23723 3' -52.1 NC_005261.1 + 111615 0.67 0.965754
Target:  5'- cGGcuGGGCUGCGgcgCcGUGCCgccgCCGCc -3'
miRNA:   3'- -CCu-UCCGAUGCaa-GaCGUGGaa--GGCG- -5'
23723 3' -52.1 NC_005261.1 + 45415 0.67 0.965754
Target:  5'- ----uGCUGCGgcgcCUGCGCCcgCCGCc -3'
miRNA:   3'- ccuucCGAUGCaa--GACGUGGaaGGCG- -5'
23723 3' -52.1 NC_005261.1 + 43808 0.67 0.965754
Target:  5'- aGggGGCgcCGggC-GCGCCcUCCGUg -3'
miRNA:   3'- cCuuCCGauGCaaGaCGUGGaAGGCG- -5'
23723 3' -52.1 NC_005261.1 + 32201 0.67 0.964752
Target:  5'- uGGAGcuGGCgcccgACGagCUGCcggccgcggcggugGCCUUCUGCg -3'
miRNA:   3'- -CCUU--CCGa----UGCaaGACG--------------UGGAAGGCG- -5'
23723 3' -52.1 NC_005261.1 + 97487 0.67 0.962334
Target:  5'- gGGggGGCccUugGgg--GCGCCggggCCGCc -3'
miRNA:   3'- -CCuuCCG--AugCaagaCGUGGaa--GGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.