miRNA display CGI


Results 1 - 20 of 447 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23723 5' -62 NC_005261.1 + 43298 0.86 0.033857
Target:  5'- cCGCGGggGGCG-CCGGCAGCCCGg- -3'
miRNA:   3'- cGCGCCuuCCGCaGGUCGUCGGGCgc -5'
23723 5' -62 NC_005261.1 + 70672 0.85 0.040391
Target:  5'- cCGCGGGccgcaccuccagccAGGCGUCCAGCgcGGCCCGCGc -3'
miRNA:   3'- cGCGCCU--------------UCCGCAGGUCG--UCGGGCGC- -5'
23723 5' -62 NC_005261.1 + 70785 0.83 0.054165
Target:  5'- -gGCGaGAAGGCGUCCAGCAGCucaaaguCCGCGc -3'
miRNA:   3'- cgCGC-CUUCCGCAGGUCGUCG-------GGCGC- -5'
23723 5' -62 NC_005261.1 + 104322 0.83 0.055742
Target:  5'- cGCGCGGAcgcGcGCGUCCAGCGGCCgGCc -3'
miRNA:   3'- -CGCGCCUu--C-CGCAGGUCGUCGGgCGc -5'
23723 5' -62 NC_005261.1 + 125342 0.83 0.060273
Target:  5'- aGCGCGcAGGGCGUCCAGCAGgCuCCGCc -3'
miRNA:   3'- -CGCGCcUUCCGCAGGUCGUC-G-GGCGc -5'
23723 5' -62 NC_005261.1 + 121837 0.82 0.065158
Target:  5'- cGCgGCGGcgcaccGGCG-CCAGCAGCCCGCGg -3'
miRNA:   3'- -CG-CGCCuu----CCGCaGGUCGUCGGGCGC- -5'
23723 5' -62 NC_005261.1 + 71401 0.82 0.067567
Target:  5'- cGCGUGGuaggcGGCGUCCGGCgcggggcccggcccgGGCCCGCGg -3'
miRNA:   3'- -CGCGCCuu---CCGCAGGUCG---------------UCGGGCGC- -5'
23723 5' -62 NC_005261.1 + 80068 0.8 0.095866
Target:  5'- gGCGCGGggGGCGUgggggacgcggaCCGGCGcgcGCgCCGCGg -3'
miRNA:   3'- -CGCGCCuuCCGCA------------GGUCGU---CG-GGCGC- -5'
23723 5' -62 NC_005261.1 + 118850 0.8 0.097593
Target:  5'- gGCGCGGAGGGCGgcgcgCCcGCGGCCCuggccucggccaccGCGg -3'
miRNA:   3'- -CGCGCCUUCCGCa----GGuCGUCGGG--------------CGC- -5'
23723 5' -62 NC_005261.1 + 103618 0.79 0.100877
Target:  5'- aGCGCGGGAGGCGg-CGGCGGCCauCGCc -3'
miRNA:   3'- -CGCGCCUUCCGCagGUCGUCGG--GCGc -5'
23723 5' -62 NC_005261.1 + 42655 0.79 0.108308
Target:  5'- cGCGCGGAAccagccaagcGGCGgccgggccgccgCCGGCAGCCgCGCGg -3'
miRNA:   3'- -CGCGCCUU----------CCGCa-----------GGUCGUCGG-GCGC- -5'
23723 5' -62 NC_005261.1 + 34932 0.78 0.117429
Target:  5'- aCGCGGggGGCGgCCGGCgcgacccgGGCCCgGCGg -3'
miRNA:   3'- cGCGCCuuCCGCaGGUCG--------UCGGG-CGC- -5'
23723 5' -62 NC_005261.1 + 58072 0.78 0.120423
Target:  5'- aCGCGGAcGGCGgcgCCAG-GGCCCGCGu -3'
miRNA:   3'- cGCGCCUuCCGCa--GGUCgUCGGGCGC- -5'
23723 5' -62 NC_005261.1 + 99558 0.78 0.120423
Target:  5'- cGCGCcaGGAAGGCGUCgUAGCucugGGCCUGCGc -3'
miRNA:   3'- -CGCG--CCUUCCGCAG-GUCG----UCGGGCGC- -5'
23723 5' -62 NC_005261.1 + 47715 0.77 0.136484
Target:  5'- gGCGuCGGGGgccuccucGGCGgacaCCAGCAGCCCGCu -3'
miRNA:   3'- -CGC-GCCUU--------CCGCa---GGUCGUCGGGCGc -5'
23723 5' -62 NC_005261.1 + 63039 0.77 0.139924
Target:  5'- cCGCGGcGAGGCGgucgCgCAGCAGCgCCGCGu -3'
miRNA:   3'- cGCGCC-UUCCGCa---G-GUCGUCG-GGCGC- -5'
23723 5' -62 NC_005261.1 + 59430 0.77 0.143444
Target:  5'- cGCGCGGcccggcAGGCG-CCGGCAGCagCGCGg -3'
miRNA:   3'- -CGCGCCu-----UCCGCaGGUCGUCGg-GCGC- -5'
23723 5' -62 NC_005261.1 + 85542 0.77 0.147044
Target:  5'- cGCGCGGgcGGC-UCCGucuGCGGCgCCGCGa -3'
miRNA:   3'- -CGCGCCuuCCGcAGGU---CGUCG-GGCGC- -5'
23723 5' -62 NC_005261.1 + 124608 0.77 0.147044
Target:  5'- cGUGCGGcauAGcGCGUCCAGCGGCaucugCGCGa -3'
miRNA:   3'- -CGCGCCu--UC-CGCAGGUCGUCGg----GCGC- -5'
23723 5' -62 NC_005261.1 + 64884 0.77 0.154492
Target:  5'- gGCgGCGGGAGcGCcggGUCCAGCAGCgCGUGg -3'
miRNA:   3'- -CG-CGCCUUC-CG---CAGGUCGUCGgGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.