miRNA display CGI


Results 1 - 20 of 105 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23724 3' -60.1 NC_005261.1 + 44428 0.66 0.669775
Target:  5'- -aCGCCgacgacguggAGCG-GCUCUCGCGGCUGu- -3'
miRNA:   3'- acGUGG----------UCGUaCGGGAGCGCCGACuu -5'
23724 3' -60.1 NC_005261.1 + 38550 0.66 0.669775
Target:  5'- aGCGCCGGCGcgcgGCCa-UGCGGCgGGu -3'
miRNA:   3'- aCGUGGUCGUa---CGGgaGCGCCGaCUu -5'
23724 3' -60.1 NC_005261.1 + 49792 0.66 0.669775
Target:  5'- cGCGCCAGCGcgagacgucGCCCUcCGCGGg---- -3'
miRNA:   3'- aCGUGGUCGUa--------CGGGA-GCGCCgacuu -5'
23724 3' -60.1 NC_005261.1 + 71227 0.66 0.659537
Target:  5'- cGCGCgCAcGCG-GCCCUCGgCGGCg--- -3'
miRNA:   3'- aCGUG-GU-CGUaCGGGAGC-GCCGacuu -5'
23724 3' -60.1 NC_005261.1 + 133282 0.66 0.659537
Target:  5'- gGCGCCGGCGccCgCCUCGUGGCc--- -3'
miRNA:   3'- aCGUGGUCGUacG-GGAGCGCCGacuu -5'
23724 3' -60.1 NC_005261.1 + 106897 0.66 0.659537
Target:  5'- aGCGCCuGCGUcGUCCgcgcCGCGGCg--- -3'
miRNA:   3'- aCGUGGuCGUA-CGGGa---GCGCCGacuu -5'
23724 3' -60.1 NC_005261.1 + 82161 0.66 0.659537
Target:  5'- cGCGCCAGCAaGCgCggCGCGGaaGGc -3'
miRNA:   3'- aCGUGGUCGUaCGgGa-GCGCCgaCUu -5'
23724 3' -60.1 NC_005261.1 + 76067 0.66 0.659537
Target:  5'- gGCGCCAccagggcgggcuGC-UGCgCCUCGUGGCgcugGAGc -3'
miRNA:   3'- aCGUGGU------------CGuACG-GGAGCGCCGa---CUU- -5'
23724 3' -60.1 NC_005261.1 + 97106 0.66 0.659537
Target:  5'- gGCGCCAGCcgGgCC--GCGGCcGGAg -3'
miRNA:   3'- aCGUGGUCGuaCgGGagCGCCGaCUU- -5'
23724 3' -60.1 NC_005261.1 + 1895 0.66 0.655436
Target:  5'- cGCGCCAGCGcGCgCCgcucaggccagcgCGCGGCg--- -3'
miRNA:   3'- aCGUGGUCGUaCG-GGa------------GCGCCGacuu -5'
23724 3' -60.1 NC_005261.1 + 95380 0.66 0.649278
Target:  5'- cGCGgccccCCGGCGcGCCgCUCGCGGCc--- -3'
miRNA:   3'- aCGU-----GGUCGUaCGG-GAGCGCCGacuu -5'
23724 3' -60.1 NC_005261.1 + 107809 0.66 0.649278
Target:  5'- cGCGCgCGGCG-GCCCUaGCGGCc--- -3'
miRNA:   3'- aCGUG-GUCGUaCGGGAgCGCCGacuu -5'
23724 3' -60.1 NC_005261.1 + 121392 0.66 0.649278
Target:  5'- gGCGgCGGCGccUGCCCgagugCGaCGGCUGc- -3'
miRNA:   3'- aCGUgGUCGU--ACGGGa----GC-GCCGACuu -5'
23724 3' -60.1 NC_005261.1 + 32018 0.66 0.649278
Target:  5'- aGUACCGGCAgcgcgUGCUgcCGCGGCUcGAc -3'
miRNA:   3'- aCGUGGUCGU-----ACGGgaGCGCCGA-CUu -5'
23724 3' -60.1 NC_005261.1 + 3740 0.66 0.637976
Target:  5'- cGCGCCGGCGgcgcaccGCgccgccucuagcgCCUCGCGGCa--- -3'
miRNA:   3'- aCGUGGUCGUa------CG-------------GGAGCGCCGacuu -5'
23724 3' -60.1 NC_005261.1 + 65154 0.66 0.628726
Target:  5'- cGCGCCAGCgcgcagaagGUGCgCUCGCuGCcgUGGAu -3'
miRNA:   3'- aCGUGGUCG---------UACGgGAGCGcCG--ACUU- -5'
23724 3' -60.1 NC_005261.1 + 113116 0.66 0.628726
Target:  5'- gGCAUgGaCAUGCUCUCGCccgccgcgcggcGGCUGAAc -3'
miRNA:   3'- aCGUGgUcGUACGGGAGCG------------CCGACUU- -5'
23724 3' -60.1 NC_005261.1 + 49311 0.66 0.622559
Target:  5'- aGCGCCGcGCA-GCCCUCgagccggaacucgacGCGGUUGu- -3'
miRNA:   3'- aCGUGGU-CGUaCGGGAG---------------CGCCGACuu -5'
23724 3' -60.1 NC_005261.1 + 84594 0.66 0.61845
Target:  5'- cUGCGCCAGCGcGCCgUUGCugccGUUGAu -3'
miRNA:   3'- -ACGUGGUCGUaCGGgAGCGc---CGACUu -5'
23724 3' -60.1 NC_005261.1 + 59444 0.66 0.61845
Target:  5'- gGCGCCGGCAgcaGCgCggcCGCGGCgucgGGGg -3'
miRNA:   3'- aCGUGGUCGUa--CGgGa--GCGCCGa---CUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.