miRNA display CGI


Results 1 - 20 of 136 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23724 5' -58.1 NC_005261.1 + 38234 0.66 0.840152
Target:  5'- cCGUg-CGgAGCGGGGCGCCGGGcucgcacgccagccuGGGc -3'
miRNA:   3'- -GCAagGCgUCGCUCCGCGGUUU---------------CCCc -5'
23724 5' -58.1 NC_005261.1 + 127338 0.66 0.836923
Target:  5'- gGggCCggaGCGGCGGGGCGCU---GGGc -3'
miRNA:   3'- gCaaGG---CGUCGCUCCGCGGuuuCCCc -5'
23724 5' -58.1 NC_005261.1 + 419 0.66 0.836923
Target:  5'- gGUcCCGCGaCGGGGUGCCcacggaccgGGAcGGGGa -3'
miRNA:   3'- gCAaGGCGUcGCUCCGCGG---------UUU-CCCC- -5'
23724 5' -58.1 NC_005261.1 + 138090 0.66 0.836923
Target:  5'- gGUcCCGCGaCGGGGUGCCcacggaccgGGAcGGGGa -3'
miRNA:   3'- gCAaGGCGUcGCUCCGCGG---------UUU-CCCC- -5'
23724 5' -58.1 NC_005261.1 + 24185 0.66 0.836923
Target:  5'- gGggUCGuCGGCGAGGCuCCAGGaucgucggcGGGGu -3'
miRNA:   3'- gCaaGGC-GUCGCUCCGcGGUUU---------CCCC- -5'
23724 5' -58.1 NC_005261.1 + 78524 0.66 0.836923
Target:  5'- ----gCGCgAGCgGAGGCGgCGAGGGGa -3'
miRNA:   3'- gcaagGCG-UCG-CUCCGCgGUUUCCCc -5'
23724 5' -58.1 NC_005261.1 + 54139 0.66 0.836923
Target:  5'- aCGgcacgCCGCAcgcggccgugcGCGGGGuUGCCGggaagaccAAGGGGa -3'
miRNA:   3'- -GCaa---GGCGU-----------CGCUCC-GCGGU--------UUCCCC- -5'
23724 5' -58.1 NC_005261.1 + 23427 0.66 0.828725
Target:  5'- gGcgCUGCGcGuCGGGGCGCCAGuccucAGGGc -3'
miRNA:   3'- gCaaGGCGU-C-GCUCCGCGGUU-----UCCCc -5'
23724 5' -58.1 NC_005261.1 + 24285 0.66 0.828725
Target:  5'- cCGggUgGgGGUGGGGgGCCAGgaugaggguGGGGGg -3'
miRNA:   3'- -GCaaGgCgUCGCUCCgCGGUU---------UCCCC- -5'
23724 5' -58.1 NC_005261.1 + 110442 0.66 0.828725
Target:  5'- gCGUUcCCGCaccgGGCGuuuGGGUGCCuGGGcGGGc -3'
miRNA:   3'- -GCAA-GGCG----UCGC---UCCGCGGuUUC-CCC- -5'
23724 5' -58.1 NC_005261.1 + 127677 0.66 0.827896
Target:  5'- gGgaCgGCGGCGGccgcugccccggcGGCGCCGGAGGa- -3'
miRNA:   3'- gCaaGgCGUCGCU-------------CCGCGGUUUCCcc -5'
23724 5' -58.1 NC_005261.1 + 136608 0.66 0.820354
Target:  5'- gCGUggaGCGGCGcgcGcGCGCCGAGGGcGGc -3'
miRNA:   3'- -GCAaggCGUCGCu--C-CGCGGUUUCC-CC- -5'
23724 5' -58.1 NC_005261.1 + 4569 0.66 0.820354
Target:  5'- --aUCCGCgggcggguccGGCGGGGCGCCccccggcgccAGGGc -3'
miRNA:   3'- gcaAGGCG----------UCGCUCCGCGGuu--------UCCCc -5'
23724 5' -58.1 NC_005261.1 + 73481 0.66 0.820354
Target:  5'- uGggCCGCGGCGcGGCGCgCGGAcGcGGc -3'
miRNA:   3'- gCaaGGCGUCGCuCCGCG-GUUUcC-CC- -5'
23724 5' -58.1 NC_005261.1 + 1178 0.66 0.820354
Target:  5'- cCGcgCCGCGGCcGGG-GCCGGGGccGGGc -3'
miRNA:   3'- -GCaaGGCGUCGcUCCgCGGUUUC--CCC- -5'
23724 5' -58.1 NC_005261.1 + 2744 0.66 0.820354
Target:  5'- uGcgCCGCGGCGGGcCGUCGcGGcGGGc -3'
miRNA:   3'- gCaaGGCGUCGCUCcGCGGUuUC-CCC- -5'
23724 5' -58.1 NC_005261.1 + 32986 0.66 0.819507
Target:  5'- gGgaCCGCGGaggaGGGG-GCCGAccggggaAGGGGg -3'
miRNA:   3'- gCaaGGCGUCg---CUCCgCGGUU-------UCCCC- -5'
23724 5' -58.1 NC_005261.1 + 20182 0.66 0.81781
Target:  5'- ---gCCGCAaggcagcaggcgaaGCGGGGcCGCCAAAGGc- -3'
miRNA:   3'- gcaaGGCGU--------------CGCUCC-GCGGUUUCCcc -5'
23724 5' -58.1 NC_005261.1 + 62514 0.66 0.811816
Target:  5'- uGUUCUGCAG-GaAGGCGCCGcgcggcauGGGc -3'
miRNA:   3'- gCAAGGCGUCgC-UCCGCGGUuu------CCCc -5'
23724 5' -58.1 NC_005261.1 + 1047 0.66 0.811816
Target:  5'- gCGggCgGCGGCGuuagcGGCGC--GGGGGGc -3'
miRNA:   3'- -GCaaGgCGUCGCu----CCGCGguUUCCCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.