miRNA display CGI


Results 1 - 20 of 661 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23725 3' -56.6 NC_005261.1 + 125999 0.66 0.895962
Target:  5'- uGGC-CUCUggagucGUcccguaguugaucgcGCCGCGCGgCCGCg -3'
miRNA:   3'- -CCGcGAGAaa----UA---------------UGGCGCGCgGGCGg -5'
23725 3' -56.6 NC_005261.1 + 81706 0.66 0.895962
Target:  5'- cGGCGCcguUCg--GU-CCGCGCGCagcagcggcacgcguCCGCa -3'
miRNA:   3'- -CCGCG---AGaaaUAuGGCGCGCG---------------GGCGg -5'
23725 3' -56.6 NC_005261.1 + 98316 0.66 0.895962
Target:  5'- gGGCGC-CgccgccagcgGCgGCGCGCCCcguGUCg -3'
miRNA:   3'- -CCGCGaGaaaua-----UGgCGCGCGGG---CGG- -5'
23725 3' -56.6 NC_005261.1 + 29317 0.66 0.893336
Target:  5'- aGCGCgcc----GCCGC-CGCCCgGCCg -3'
miRNA:   3'- cCGCGagaaauaUGGCGcGCGGG-CGG- -5'
23725 3' -56.6 NC_005261.1 + 51368 0.66 0.893336
Target:  5'- cGGCGCggaguacgCgcag-GCCGUGCGCgaacuCCGCg -3'
miRNA:   3'- -CCGCGa-------GaaauaUGGCGCGCG-----GGCGg -5'
23725 3' -56.6 NC_005261.1 + 68670 0.66 0.893336
Target:  5'- cGCGC-C-----GCCG-GCGUCCGCCg -3'
miRNA:   3'- cCGCGaGaaauaUGGCgCGCGGGCGG- -5'
23725 3' -56.6 NC_005261.1 + 59703 0.66 0.893336
Target:  5'- cGCGCUCcgggcagACC---CGCCCGCCg -3'
miRNA:   3'- cCGCGAGaaaua--UGGcgcGCGGGCGG- -5'
23725 3' -56.6 NC_005261.1 + 41674 0.66 0.893336
Target:  5'- aGGCGCUCaccucgcggUGUgaagaguagaGCCGCGUccaGCCCuGCa -3'
miRNA:   3'- -CCGCGAGaa-------AUA----------UGGCGCG---CGGG-CGg -5'
23725 3' -56.6 NC_005261.1 + 21830 0.66 0.893336
Target:  5'- gGGCGCgc---GUGCgGgCGgGCUCGCCc -3'
miRNA:   3'- -CCGCGagaaaUAUGgC-GCgCGGGCGG- -5'
23725 3' -56.6 NC_005261.1 + 15624 0.66 0.893336
Target:  5'- aGCaGCUCgacggucccgUUGUAgCGC-CGCCCgGCCg -3'
miRNA:   3'- cCG-CGAGa---------AAUAUgGCGcGCGGG-CGG- -5'
23725 3' -56.6 NC_005261.1 + 50826 0.66 0.893336
Target:  5'- cGCGCggCUUggcGCCGCgagcugGCGCCUGUg -3'
miRNA:   3'- cCGCGa-GAAauaUGGCG------CGCGGGCGg -5'
23725 3' -56.6 NC_005261.1 + 106789 0.66 0.893336
Target:  5'- aGCGCcgUCUgcgcccgcACCaGCGCcgagugGCCCGCCa -3'
miRNA:   3'- cCGCG--AGAaaua----UGG-CGCG------CGGGCGG- -5'
23725 3' -56.6 NC_005261.1 + 21037 0.66 0.893336
Target:  5'- gGGCGCgc-----ACCGUGCGCCauCCu -3'
miRNA:   3'- -CCGCGagaaauaUGGCGCGCGGgcGG- -5'
23725 3' -56.6 NC_005261.1 + 104661 0.66 0.893336
Target:  5'- cGCGCUggCgggcgUGUGCUGCggcaGCGCCUggGCCa -3'
miRNA:   3'- cCGCGA--Gaa---AUAUGGCG----CGCGGG--CGG- -5'
23725 3' -56.6 NC_005261.1 + 30291 0.66 0.893336
Target:  5'- uGGaCGCUggc----CCGCGCgcucuucaGCCCGCCg -3'
miRNA:   3'- -CC-GCGAgaaauauGGCGCG--------CGGGCGG- -5'
23725 3' -56.6 NC_005261.1 + 45125 0.66 0.893336
Target:  5'- gGGCGCgcug-AUGCUGaCGCucgacgGCCgCGCCg -3'
miRNA:   3'- -CCGCGagaaaUAUGGC-GCG------CGG-GCGG- -5'
23725 3' -56.6 NC_005261.1 + 69252 0.66 0.88933
Target:  5'- aGGCGCUggc----CCGCGCcgaccccggcgagccGCCCGCg -3'
miRNA:   3'- -CCGCGAgaaauauGGCGCG---------------CGGGCGg -5'
23725 3' -56.6 NC_005261.1 + 104309 0.66 0.888654
Target:  5'- cGCGCUCaaagagcgcgcggACgCGCGCGUCCagcgGCCg -3'
miRNA:   3'- cCGCGAGaaaua--------UG-GCGCGCGGG----CGG- -5'
23725 3' -56.6 NC_005261.1 + 91175 0.66 0.887296
Target:  5'- cGGCaGCUCccgccgggcuUCGCGCGCUucggCGCCg -3'
miRNA:   3'- -CCG-CGAGaaauau----GGCGCGCGG----GCGG- -5'
23725 3' -56.6 NC_005261.1 + 67286 0.66 0.887296
Target:  5'- aGCaGCccccccgccGCCGCGCGCgCGCCg -3'
miRNA:   3'- cCG-CGagaaaua--UGGCGCGCGgGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.