miRNA display CGI


Results 1 - 20 of 661 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23725 3' -56.6 NC_005261.1 + 82184 0.66 0.857546
Target:  5'- aGGCGCggcgugCgcagaaGCCGuUGUGCaCCGCCa -3'
miRNA:   3'- -CCGCGa-----Gaaaua-UGGC-GCGCG-GGCGG- -5'
23725 3' -56.6 NC_005261.1 + 121809 0.66 0.86513
Target:  5'- gGGCGCguggCUgggcuCUGCGgGC-CGCCg -3'
miRNA:   3'- -CCGCGa---GAaauauGGCGCgCGgGCGG- -5'
23725 3' -56.6 NC_005261.1 + 29246 0.66 0.86513
Target:  5'- cGGCGCcgCgcgacggGCCGCcgccgcuggaGgGCCCGCUg -3'
miRNA:   3'- -CCGCGa-Gaaaua--UGGCG----------CgCGGGCGG- -5'
23725 3' -56.6 NC_005261.1 + 22673 0.66 0.857546
Target:  5'- cGGCGCcCga-GUGCCGCcgggggacGgGCCCGgCg -3'
miRNA:   3'- -CCGCGaGaaaUAUGGCG--------CgCGGGCgG- -5'
23725 3' -56.6 NC_005261.1 + 39466 0.66 0.857546
Target:  5'- cGGCGCggc----GCCccaaCGgGCCCGCCg -3'
miRNA:   3'- -CCGCGagaaauaUGGc---GCgCGGGCGG- -5'
23725 3' -56.6 NC_005261.1 + 72314 0.66 0.857546
Target:  5'- cGCGCUCg--AUGCCcCGCgGCCCa-- -3'
miRNA:   3'- cCGCGAGaaaUAUGGcGCG-CGGGcgg -5'
23725 3' -56.6 NC_005261.1 + 81706 0.66 0.895962
Target:  5'- cGGCGCcguUCg--GU-CCGCGCGCagcagcggcacgcguCCGCa -3'
miRNA:   3'- -CCGCG---AGaaaUAuGGCGCGCG---------------GGCGg -5'
23725 3' -56.6 NC_005261.1 + 56287 0.66 0.86513
Target:  5'- uGGCGCcgCUguucGCCGCcacgGCcuCCCGCCu -3'
miRNA:   3'- -CCGCGa-GAaauaUGGCG----CGc-GGGCGG- -5'
23725 3' -56.6 NC_005261.1 + 10702 0.66 0.86513
Target:  5'- aGGCGUUCgcgg-GCCGCcuccGgGCCCcCCu -3'
miRNA:   3'- -CCGCGAGaaauaUGGCG----CgCGGGcGG- -5'
23725 3' -56.6 NC_005261.1 + 96871 0.66 0.854455
Target:  5'- gGGCGCggguagCgugcggauCCGCgccucgGCGUCCGCCa -3'
miRNA:   3'- -CCGCGa-----Gaaauau--GGCG------CGCGGGCGG- -5'
23725 3' -56.6 NC_005261.1 + 3493 0.66 0.86513
Target:  5'- gGGCcacgGUUCgcgccGCCaGCGCGgCCGCCu -3'
miRNA:   3'- -CCG----CGAGaaauaUGG-CGCGCgGGCGG- -5'
23725 3' -56.6 NC_005261.1 + 70991 0.66 0.854455
Target:  5'- uGGCGCgcgggcgGCCGCcagGCcaGCUCGCCg -3'
miRNA:   3'- -CCGCGagaaauaUGGCG---CG--CGGGCGG- -5'
23725 3' -56.6 NC_005261.1 + 32253 0.66 0.86513
Target:  5'- cGCGCUgCUgga-GCCGCaCGCCgaggCGCCg -3'
miRNA:   3'- cCGCGA-GAaauaUGGCGcGCGG----GCGG- -5'
23725 3' -56.6 NC_005261.1 + 103562 0.66 0.86513
Target:  5'- aGGgGC-Ccc-GUGCCGcCGcCGCCCGCg -3'
miRNA:   3'- -CCgCGaGaaaUAUGGC-GC-GCGGGCGg -5'
23725 3' -56.6 NC_005261.1 + 20824 0.66 0.86513
Target:  5'- cGCGCagCUga--ACUGCGCGUUCGCg -3'
miRNA:   3'- cCGCGa-GAaauaUGGCGCGCGGGCGg -5'
23725 3' -56.6 NC_005261.1 + 60778 0.66 0.857546
Target:  5'- uGGaCGC-C-----GCCGCGCGCagcaCCGCCg -3'
miRNA:   3'- -CC-GCGaGaaauaUGGCGCGCG----GGCGG- -5'
23725 3' -56.6 NC_005261.1 + 48601 0.66 0.86513
Target:  5'- -aCGCUC-----ACCGCGUGCgCgGCCg -3'
miRNA:   3'- ccGCGAGaaauaUGGCGCGCG-GgCGG- -5'
23725 3' -56.6 NC_005261.1 + 88329 0.66 0.86513
Target:  5'- aGGCuGCaaggCUg---GCgGCGC-CCCGCCg -3'
miRNA:   3'- -CCG-CGa---GAaauaUGgCGCGcGGGCGG- -5'
23725 3' -56.6 NC_005261.1 + 32389 0.66 0.86513
Target:  5'- cGGCGCggcggCgucccggAgCGCGUGCcgCCGCCg -3'
miRNA:   3'- -CCGCGa----Gaaaua--UgGCGCGCG--GGCGG- -5'
23725 3' -56.6 NC_005261.1 + 15791 0.66 0.86513
Target:  5'- gGGCGC-Cgc----CCGCGCGgCCagCGCCg -3'
miRNA:   3'- -CCGCGaGaaauauGGCGCGC-GG--GCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.