miRNA display CGI


Results 21 - 40 of 661 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23725 3' -56.6 NC_005261.1 + 84339 0.66 0.871048
Target:  5'- cGCGCUCgcgcacgcGCCaaagucgaagGCGcCGCCCGCg -3'
miRNA:   3'- cCGCGAGaaaua---UGG----------CGC-GCGGGCGg -5'
23725 3' -56.6 NC_005261.1 + 15791 0.66 0.86513
Target:  5'- gGGCGC-Cgc----CCGCGCGgCCagCGCCg -3'
miRNA:   3'- -CCGCGaGaaauauGGCGCGC-GG--GCGG- -5'
23725 3' -56.6 NC_005261.1 + 10702 0.66 0.86513
Target:  5'- aGGCGUUCgcgg-GCCGCcuccGgGCCCcCCu -3'
miRNA:   3'- -CCGCGAGaaauaUGGCG----CgCGGGcGG- -5'
23725 3' -56.6 NC_005261.1 + 58764 0.66 0.857546
Target:  5'- cGCGC-CgagagcGCCcccaGCGCGCCgGCCa -3'
miRNA:   3'- cCGCGaGaaaua-UGG----CGCGCGGgCGG- -5'
23725 3' -56.6 NC_005261.1 + 52999 0.66 0.865877
Target:  5'- cGGCGCccaggcguCgGCGCaGCUCGCCa -3'
miRNA:   3'- -CCGCGagaaauauGgCGCG-CGGGCGG- -5'
23725 3' -56.6 NC_005261.1 + 3493 0.66 0.86513
Target:  5'- gGGCcacgGUUCgcgccGCCaGCGCGgCCGCCu -3'
miRNA:   3'- -CCG----CGAGaaauaUGG-CGCGCgGGCGG- -5'
23725 3' -56.6 NC_005261.1 + 108310 0.66 0.867365
Target:  5'- cGGCGUcccagacggccGCCGCGUGCuCCGCg -3'
miRNA:   3'- -CCGCGagaaaua----UGGCGCGCG-GGCGg -5'
23725 3' -56.6 NC_005261.1 + 88329 0.66 0.86513
Target:  5'- aGGCuGCaaggCUg---GCgGCGC-CCCGCCg -3'
miRNA:   3'- -CCG-CGa---GAaauaUGgCGCGcGGGCGG- -5'
23725 3' -56.6 NC_005261.1 + 117635 0.66 0.86513
Target:  5'- cGCGC-Cgg---GCC-CGCGCCgCGCCc -3'
miRNA:   3'- cCGCGaGaaauaUGGcGCGCGG-GCGG- -5'
23725 3' -56.6 NC_005261.1 + 29246 0.66 0.86513
Target:  5'- cGGCGCcgCgcgacggGCCGCcgccgcuggaGgGCCCGCUg -3'
miRNA:   3'- -CCGCGa-Gaaaua--UGGCG----------CgCGGGCGG- -5'
23725 3' -56.6 NC_005261.1 + 123180 0.66 0.869581
Target:  5'- gGGCGUgguggCUggUGUgggcggacccagccGCCGCGUaagcgcgGCCUGCCg -3'
miRNA:   3'- -CCGCGa----GAa-AUA--------------UGGCGCG-------CGGGCGG- -5'
23725 3' -56.6 NC_005261.1 + 79245 0.66 0.868105
Target:  5'- cGGCGCccagcacaACCGUGCccacuGCCUGCCc -3'
miRNA:   3'- -CCGCGagaaaua-UGGCGCG-----CGGGCGG- -5'
23725 3' -56.6 NC_005261.1 + 81706 0.66 0.895962
Target:  5'- cGGCGCcguUCg--GU-CCGCGCGCagcagcggcacgcguCCGCa -3'
miRNA:   3'- -CCGCG---AGaaaUAuGGCGCGCG---------------GGCGg -5'
23725 3' -56.6 NC_005261.1 + 84275 0.66 0.872506
Target:  5'- uGGCGCag---GUGCCGCcgGCGgCCCcgGCCc -3'
miRNA:   3'- -CCGCGagaaaUAUGGCG--CGC-GGG--CGG- -5'
23725 3' -56.6 NC_005261.1 + 48601 0.66 0.86513
Target:  5'- -aCGCUC-----ACCGCGUGCgCgGCCg -3'
miRNA:   3'- ccGCGAGaaauaUGGCGCGCG-GgCGG- -5'
23725 3' -56.6 NC_005261.1 + 32389 0.66 0.86513
Target:  5'- cGGCGCggcggCgucccggAgCGCGUGCcgCCGCCg -3'
miRNA:   3'- -CCGCGa----Gaaaua--UgGCGCGCG--GGCGG- -5'
23725 3' -56.6 NC_005261.1 + 27492 0.66 0.868105
Target:  5'- gGGCGCaccuggaccgccaggUCUgggcggGCCaGCuGgGCCCGCCc -3'
miRNA:   3'- -CCGCG---------------AGAaaua--UGG-CG-CgCGGGCGG- -5'
23725 3' -56.6 NC_005261.1 + 70991 0.66 0.854455
Target:  5'- uGGCGCgcgggcgGCCGCcagGCcaGCUCGCCg -3'
miRNA:   3'- -CCGCGagaaauaUGGCG---CG--CGGGCGG- -5'
23725 3' -56.6 NC_005261.1 + 60778 0.66 0.857546
Target:  5'- uGGaCGC-C-----GCCGCGCGCagcaCCGCCg -3'
miRNA:   3'- -CC-GCGaGaaauaUGGCGCGCG----GGCGG- -5'
23725 3' -56.6 NC_005261.1 + 137544 0.66 0.872506
Target:  5'- aGGUugGCUUg--GUGCCaacccuagccucGCGC-CCCGCCa -3'
miRNA:   3'- -CCG--CGAGaaaUAUGG------------CGCGcGGGCGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.