miRNA display CGI


Results 41 - 60 of 661 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23725 3' -56.6 NC_005261.1 + 129204 0.66 0.87683
Target:  5'- uGGCGCagcugcuUCUgcugGUGCgGCGCcucaaguggcucccGCCCaGCCu -3'
miRNA:   3'- -CCGCG-------AGAaa--UAUGgCGCG--------------CGGG-CGG- -5'
23725 3' -56.6 NC_005261.1 + 3493 0.66 0.86513
Target:  5'- gGGCcacgGUUCgcgccGCCaGCGCGgCCGCCu -3'
miRNA:   3'- -CCG----CGAGaaauaUGG-CGCGCgGGCGG- -5'
23725 3' -56.6 NC_005261.1 + 48601 0.66 0.86513
Target:  5'- -aCGCUC-----ACCGCGUGCgCgGCCg -3'
miRNA:   3'- ccGCGAGaaauaUGGCGCGCG-GgCGG- -5'
23725 3' -56.6 NC_005261.1 + 108310 0.66 0.867365
Target:  5'- cGGCGUcccagacggccGCCGCGUGCuCCGCg -3'
miRNA:   3'- -CCGCGagaaaua----UGGCGCGCG-GGCGg -5'
23725 3' -56.6 NC_005261.1 + 31407 0.66 0.872506
Target:  5'- uGGUGCUCUacg-ACC-CGCuGCCCGg- -3'
miRNA:   3'- -CCGCGAGAaauaUGGcGCG-CGGGCgg -5'
23725 3' -56.6 NC_005261.1 + 121601 0.66 0.872506
Target:  5'- cGGCcucGUUCUcgUAcACCGcCGCcuCCCGCCg -3'
miRNA:   3'- -CCG---CGAGAa-AUaUGGC-GCGc-GGGCGG- -5'
23725 3' -56.6 NC_005261.1 + 27492 0.66 0.868105
Target:  5'- gGGCGCaccuggaccgccaggUCUgggcggGCCaGCuGgGCCCGCCc -3'
miRNA:   3'- -CCGCG---------------AGAaaua--UGG-CG-CgCGGGCGG- -5'
23725 3' -56.6 NC_005261.1 + 134459 0.66 0.872506
Target:  5'- aGGCGCUCUaccugGCCGCcaucgugggcgGCGUCgucgCGCUg -3'
miRNA:   3'- -CCGCGAGAaaua-UGGCG-----------CGCGG----GCGG- -5'
23725 3' -56.6 NC_005261.1 + 39893 0.66 0.878254
Target:  5'- cGCGCggCUgugcagcugGCgCGCGCGgCCGUCg -3'
miRNA:   3'- cCGCGa-GAaaua-----UG-GCGCGCgGGCGG- -5'
23725 3' -56.6 NC_005261.1 + 117635 0.66 0.86513
Target:  5'- cGCGC-Cgg---GCC-CGCGCCgCGCCc -3'
miRNA:   3'- cCGCGaGaaauaUGGcGCGCGG-GCGG- -5'
23725 3' -56.6 NC_005261.1 + 35467 0.66 0.878963
Target:  5'- cGGCGCgcgCgcgucccggggucccUGCCGCgGCaCCCGCCc -3'
miRNA:   3'- -CCGCGa--Gaaau-----------AUGGCG-CGcGGGCGG- -5'
23725 3' -56.6 NC_005261.1 + 81706 0.66 0.895962
Target:  5'- cGGCGCcguUCg--GU-CCGCGCGCagcagcggcacgcguCCGCa -3'
miRNA:   3'- -CCGCG---AGaaaUAuGGCGCGCG---------------GGCGg -5'
23725 3' -56.6 NC_005261.1 + 63514 0.66 0.872506
Target:  5'- gGGCGUcgcgaugaacUCgcaa-ACCGCG-GCCUGCCc -3'
miRNA:   3'- -CCGCG----------AGaaauaUGGCGCgCGGGCGG- -5'
23725 3' -56.6 NC_005261.1 + 58764 0.66 0.857546
Target:  5'- cGCGC-CgagagcGCCcccaGCGCGCCgGCCa -3'
miRNA:   3'- cCGCGaGaaaua-UGG----CGCGCGGgCGG- -5'
23725 3' -56.6 NC_005261.1 + 102527 0.66 0.86513
Target:  5'- cGCGUgcagCUUg--GCCGCcugcggccccagGCGCCCGgCg -3'
miRNA:   3'- cCGCGa---GAAauaUGGCG------------CGCGGGCgG- -5'
23725 3' -56.6 NC_005261.1 + 61888 0.66 0.86513
Target:  5'- gGGCGC-CUUcucgcCCGUGCGCaCCaCCg -3'
miRNA:   3'- -CCGCGaGAAauau-GGCGCGCG-GGcGG- -5'
23725 3' -56.6 NC_005261.1 + 75876 0.66 0.86513
Target:  5'- cGGCGC-Cgug--GgCGCGCGCagcggcgaCGCCa -3'
miRNA:   3'- -CCGCGaGaaauaUgGCGCGCGg-------GCGG- -5'
23725 3' -56.6 NC_005261.1 + 106831 0.66 0.872506
Target:  5'- aGCGCgug--GUGCgCGuCGUccaGCCCGCCg -3'
miRNA:   3'- cCGCGagaaaUAUG-GC-GCG---CGGGCGG- -5'
23725 3' -56.6 NC_005261.1 + 98196 0.66 0.872506
Target:  5'- gGGCGCggcgg--GCaGCGgGCgCCGCCa -3'
miRNA:   3'- -CCGCGagaaauaUGgCGCgCG-GGCGG- -5'
23725 3' -56.6 NC_005261.1 + 32253 0.66 0.86513
Target:  5'- cGCGCUgCUgga-GCCGCaCGCCgaggCGCCg -3'
miRNA:   3'- cCGCGA-GAaauaUGGCGcGCGG----GCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.