miRNA display CGI


Results 61 - 80 of 661 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23725 3' -56.6 NC_005261.1 + 20824 0.66 0.86513
Target:  5'- cGCGCagCUga--ACUGCGCGUUCGCg -3'
miRNA:   3'- cCGCGa-GAaauaUGGCGCGCGGGCGg -5'
23725 3' -56.6 NC_005261.1 + 61888 0.66 0.86513
Target:  5'- gGGCGC-CUUcucgcCCGUGCGCaCCaCCg -3'
miRNA:   3'- -CCGCGaGAAauau-GGCGCGCG-GGcGG- -5'
23725 3' -56.6 NC_005261.1 + 102673 0.66 0.872506
Target:  5'- cGGCGCcC-----AgCGcCGCGUCCGCCg -3'
miRNA:   3'- -CCGCGaGaaauaUgGC-GCGCGGGCGG- -5'
23725 3' -56.6 NC_005261.1 + 102527 0.66 0.86513
Target:  5'- cGCGUgcagCUUg--GCCGCcugcggccccagGCGCCCGgCg -3'
miRNA:   3'- cCGCGa---GAAauaUGGCG------------CGCGGGCgG- -5'
23725 3' -56.6 NC_005261.1 + 70991 0.66 0.854455
Target:  5'- uGGCGCgcgggcgGCCGCcagGCcaGCUCGCCg -3'
miRNA:   3'- -CCGCGagaaauaUGGCG---CG--CGGGCGG- -5'
23725 3' -56.6 NC_005261.1 + 10702 0.66 0.86513
Target:  5'- aGGCGUUCgcgg-GCCGCcuccGgGCCCcCCu -3'
miRNA:   3'- -CCGCGAGaaauaUGGCG----CgCGGGcGG- -5'
23725 3' -56.6 NC_005261.1 + 108310 0.66 0.867365
Target:  5'- cGGCGUcccagacggccGCCGCGUGCuCCGCg -3'
miRNA:   3'- -CCGCGagaaaua----UGGCGCGCG-GGCGg -5'
23725 3' -56.6 NC_005261.1 + 87116 0.66 0.872506
Target:  5'- cGGCGUUgUagaaggGCCGCGgguacgcgagcUGCUCGCCg -3'
miRNA:   3'- -CCGCGAgAaaua--UGGCGC-----------GCGGGCGG- -5'
23725 3' -56.6 NC_005261.1 + 88329 0.66 0.86513
Target:  5'- aGGCuGCaaggCUg---GCgGCGC-CCCGCCg -3'
miRNA:   3'- -CCG-CGa---GAaauaUGgCGCGcGGGCGG- -5'
23725 3' -56.6 NC_005261.1 + 39893 0.66 0.878254
Target:  5'- cGCGCggCUgugcagcugGCgCGCGCGgCCGUCg -3'
miRNA:   3'- cCGCGa-GAaaua-----UG-GCGCGCgGGCGG- -5'
23725 3' -56.6 NC_005261.1 + 123180 0.66 0.869581
Target:  5'- gGGCGUgguggCUggUGUgggcggacccagccGCCGCGUaagcgcgGCCUGCCg -3'
miRNA:   3'- -CCGCGa----GAa-AUA--------------UGGCGCG-------CGGGCGG- -5'
23725 3' -56.6 NC_005261.1 + 11267 0.66 0.879669
Target:  5'- cGGuCGCUCUgu---CCGUcCGUCCGUCc -3'
miRNA:   3'- -CC-GCGAGAaauauGGCGcGCGGGCGG- -5'
23725 3' -56.6 NC_005261.1 + 29212 0.66 0.872506
Target:  5'- gGGCGCgcgaCUggGgcCCGCGCagGCUaCGCCg -3'
miRNA:   3'- -CCGCGa---GAaaUauGGCGCG--CGG-GCGG- -5'
23725 3' -56.6 NC_005261.1 + 118878 0.66 0.879669
Target:  5'- uGGC-CUCggcc-ACCGCGgGCgCGCUg -3'
miRNA:   3'- -CCGcGAGaaauaUGGCGCgCGgGCGG- -5'
23725 3' -56.6 NC_005261.1 + 15170 0.66 0.879669
Target:  5'- gGGCGUagCg----GCgGCgGCGCCCGCg -3'
miRNA:   3'- -CCGCGa-GaaauaUGgCG-CGCGGGCGg -5'
23725 3' -56.6 NC_005261.1 + 129204 0.66 0.87683
Target:  5'- uGGCGCagcugcuUCUgcugGUGCgGCGCcucaaguggcucccGCCCaGCCu -3'
miRNA:   3'- -CCGCG-------AGAaa--UAUGgCGCG--------------CGGG-CGG- -5'
23725 3' -56.6 NC_005261.1 + 96871 0.66 0.854455
Target:  5'- gGGCGCggguagCgugcggauCCGCgccucgGCGUCCGCCa -3'
miRNA:   3'- -CCGCGa-----Gaaauau--GGCG------CGCGGGCGG- -5'
23725 3' -56.6 NC_005261.1 + 52999 0.66 0.865877
Target:  5'- cGGCGCccaggcguCgGCGCaGCUCGCCa -3'
miRNA:   3'- -CCGCGagaaauauGgCGCG-CGGGCGG- -5'
23725 3' -56.6 NC_005261.1 + 72021 0.66 0.879669
Target:  5'- gGGgGCgac----GCUGCGCGCCC-CCg -3'
miRNA:   3'- -CCgCGagaaauaUGGCGCGCGGGcGG- -5'
23725 3' -56.6 NC_005261.1 + 10244 0.66 0.886614
Target:  5'- cGCGCaCUcgccGCCGCGgGCCuggCGCCu -3'
miRNA:   3'- cCGCGaGAaauaUGGCGCgCGG---GCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.