miRNA display CGI


Results 81 - 100 of 661 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23725 3' -56.6 NC_005261.1 + 123180 0.66 0.869581
Target:  5'- gGGCGUgguggCUggUGUgggcggacccagccGCCGCGUaagcgcgGCCUGCCg -3'
miRNA:   3'- -CCGCGa----GAa-AUA--------------UGGCGCG-------CGGGCGG- -5'
23725 3' -56.6 NC_005261.1 + 72021 0.66 0.879669
Target:  5'- gGGgGCgac----GCUGCGCGCCC-CCg -3'
miRNA:   3'- -CCgCGagaaauaUGGCGCGCGGGcGG- -5'
23725 3' -56.6 NC_005261.1 + 27492 0.66 0.868105
Target:  5'- gGGCGCaccuggaccgccaggUCUgggcggGCCaGCuGgGCCCGCCc -3'
miRNA:   3'- -CCGCG---------------AGAaaua--UGG-CG-CgCGGGCGG- -5'
23725 3' -56.6 NC_005261.1 + 29212 0.66 0.872506
Target:  5'- gGGCGCgcgaCUggGgcCCGCGCagGCUaCGCCg -3'
miRNA:   3'- -CCGCGa---GAaaUauGGCGCG--CGG-GCGG- -5'
23725 3' -56.6 NC_005261.1 + 56287 0.66 0.86513
Target:  5'- uGGCGCcgCUguucGCCGCcacgGCcuCCCGCCu -3'
miRNA:   3'- -CCGCGa-GAaauaUGGCG----CGc-GGGCGG- -5'
23725 3' -56.6 NC_005261.1 + 60778 0.66 0.857546
Target:  5'- uGGaCGC-C-----GCCGCGCGCagcaCCGCCg -3'
miRNA:   3'- -CC-GCGaGaaauaUGGCGCGCG----GGCGG- -5'
23725 3' -56.6 NC_005261.1 + 96871 0.66 0.854455
Target:  5'- gGGCGCggguagCgugcggauCCGCgccucgGCGUCCGCCa -3'
miRNA:   3'- -CCGCGa-----Gaaauau--GGCG------CGCGGGCGG- -5'
23725 3' -56.6 NC_005261.1 + 33373 0.66 0.886614
Target:  5'- cGCGCcgggCUgcggGCCGC-CGCagCCGCCg -3'
miRNA:   3'- cCGCGa---GAaauaUGGCGcGCG--GGCGG- -5'
23725 3' -56.6 NC_005261.1 + 72864 0.66 0.886614
Target:  5'- aGGCGUgg-----ACCGCGgGCagguCCGCCc -3'
miRNA:   3'- -CCGCGagaaauaUGGCGCgCG----GGCGG- -5'
23725 3' -56.6 NC_005261.1 + 87116 0.66 0.872506
Target:  5'- cGGCGUUgUagaaggGCCGCGgguacgcgagcUGCUCGCCg -3'
miRNA:   3'- -CCGCGAgAaaua--UGGCGC-----------GCGGGCGG- -5'
23725 3' -56.6 NC_005261.1 + 117635 0.66 0.86513
Target:  5'- cGCGC-Cgg---GCC-CGCGCCgCGCCc -3'
miRNA:   3'- cCGCGaGaaauaUGGcGCGCGG-GCGG- -5'
23725 3' -56.6 NC_005261.1 + 22673 0.66 0.857546
Target:  5'- cGGCGCcCga-GUGCCGCcgggggacGgGCCCGgCg -3'
miRNA:   3'- -CCGCGaGaaaUAUGGCG--------CgCGGGCgG- -5'
23725 3' -56.6 NC_005261.1 + 20824 0.66 0.86513
Target:  5'- cGCGCagCUga--ACUGCGCGUUCGCg -3'
miRNA:   3'- cCGCGa-GAaauaUGGCGCGCGGGCGg -5'
23725 3' -56.6 NC_005261.1 + 100843 0.66 0.886614
Target:  5'- gGGaGCUCggcg-ACCuGCGCGUcgaaggCCGCCa -3'
miRNA:   3'- -CCgCGAGaaauaUGG-CGCGCG------GGCGG- -5'
23725 3' -56.6 NC_005261.1 + 129204 0.66 0.87683
Target:  5'- uGGCGCagcugcuUCUgcugGUGCgGCGCcucaaguggcucccGCCCaGCCu -3'
miRNA:   3'- -CCGCG-------AGAaa--UAUGgCGCG--------------CGGG-CGG- -5'
23725 3' -56.6 NC_005261.1 + 15372 0.66 0.87683
Target:  5'- cGGCGCUCggcgcccuCgGCGCcGCCgucgaUGCCg -3'
miRNA:   3'- -CCGCGAGaaauau--GgCGCG-CGG-----GCGG- -5'
23725 3' -56.6 NC_005261.1 + 39893 0.66 0.878254
Target:  5'- cGCGCggCUgugcagcugGCgCGCGCGgCCGUCg -3'
miRNA:   3'- cCGCGa-GAaaua-----UG-GCGCGCgGGCGG- -5'
23725 3' -56.6 NC_005261.1 + 32301 0.66 0.88593
Target:  5'- gGGCGC-CgcccccGCCGCcgccgcggccgcgGCGCCCGgCg -3'
miRNA:   3'- -CCGCGaGaaaua-UGGCG-------------CGCGGGCgG- -5'
23725 3' -56.6 NC_005261.1 + 113115 0.66 0.879669
Target:  5'- cGGCauggacauGCUCUcgcccGCCGCGCGgCgGCUg -3'
miRNA:   3'- -CCG--------CGAGAaaua-UGGCGCGCgGgCGG- -5'
23725 3' -56.6 NC_005261.1 + 21755 0.66 0.879669
Target:  5'- uGCGC-CUgg--AgCGCGCGCcgggcgagCCGCCg -3'
miRNA:   3'- cCGCGaGAaauaUgGCGCGCG--------GGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.