miRNA display CGI


Results 101 - 120 of 661 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23725 3' -56.6 NC_005261.1 + 29246 0.66 0.86513
Target:  5'- cGGCGCcgCgcgacggGCCGCcgccgcuggaGgGCCCGCUg -3'
miRNA:   3'- -CCGCGa-Gaaaua--UGGCG----------CgCGGGCGG- -5'
23725 3' -56.6 NC_005261.1 + 32301 0.66 0.88593
Target:  5'- gGGCGC-CgcccccGCCGCcgccgcggccgcgGCGCCCGgCg -3'
miRNA:   3'- -CCGCGaGaaaua-UGGCG-------------CGCGGGCgG- -5'
23725 3' -56.6 NC_005261.1 + 129204 0.66 0.87683
Target:  5'- uGGCGCagcugcuUCUgcugGUGCgGCGCcucaaguggcucccGCCCaGCCu -3'
miRNA:   3'- -CCGCG-------AGAaa--UAUGgCGCG--------------CGGG-CGG- -5'
23725 3' -56.6 NC_005261.1 + 15624 0.66 0.893336
Target:  5'- aGCaGCUCgacggucccgUUGUAgCGC-CGCCCgGCCg -3'
miRNA:   3'- cCG-CGAGa---------AAUAUgGCGcGCGGG-CGG- -5'
23725 3' -56.6 NC_005261.1 + 1807 0.66 0.886614
Target:  5'- cGGCGCccCgggGUagaGCCGCGCGUaagCgGCCu -3'
miRNA:   3'- -CCGCGa-GaaaUA---UGGCGCGCG---GgCGG- -5'
23725 3' -56.6 NC_005261.1 + 106831 0.66 0.872506
Target:  5'- aGCGCgug--GUGCgCGuCGUccaGCCCGCCg -3'
miRNA:   3'- cCGCGagaaaUAUG-GC-GCG---CGGGCGG- -5'
23725 3' -56.6 NC_005261.1 + 30291 0.66 0.893336
Target:  5'- uGGaCGCUggc----CCGCGCgcucuucaGCCCGCCg -3'
miRNA:   3'- -CC-GCGAgaaauauGGCGCG--------CGGGCGG- -5'
23725 3' -56.6 NC_005261.1 + 114620 0.66 0.879669
Target:  5'- aGCGCgagUUUAUuuggucaCGCGCGCCgCGCg -3'
miRNA:   3'- cCGCGag-AAAUAug-----GCGCGCGG-GCGg -5'
23725 3' -56.6 NC_005261.1 + 68670 0.66 0.893336
Target:  5'- cGCGC-C-----GCCG-GCGUCCGCCg -3'
miRNA:   3'- cCGCGaGaaauaUGGCgCGCGGGCGG- -5'
23725 3' -56.6 NC_005261.1 + 67286 0.66 0.887296
Target:  5'- aGCaGCccccccgccGCCGCGCGCgCGCCg -3'
miRNA:   3'- cCG-CGagaaaua--UGGCGCGCGgGCGG- -5'
23725 3' -56.6 NC_005261.1 + 41674 0.66 0.893336
Target:  5'- aGGCGCUCaccucgcggUGUgaagaguagaGCCGCGUccaGCCCuGCa -3'
miRNA:   3'- -CCGCGAGaa-------AUA----------UGGCGCG---CGGG-CGg -5'
23725 3' -56.6 NC_005261.1 + 42358 0.67 0.816731
Target:  5'- gGGCGggCUg---GCCGCGCaaacguacugguGCCgGCCc -3'
miRNA:   3'- -CCGCgaGAaauaUGGCGCG------------CGGgCGG- -5'
23725 3' -56.6 NC_005261.1 + 72992 0.67 0.816731
Target:  5'- aGCGCg------GCCaGCGCGUCCGCg -3'
miRNA:   3'- cCGCGagaaauaUGG-CGCGCGGGCGg -5'
23725 3' -56.6 NC_005261.1 + 102487 0.67 0.815869
Target:  5'- cGGCGC-------GCCGcCGCGCCagCGCCu -3'
miRNA:   3'- -CCGCGagaaauaUGGC-GCGCGG--GCGG- -5'
23725 3' -56.6 NC_005261.1 + 71 0.67 0.816731
Target:  5'- cGGCGCgcgCgggggcgggGUGCgggGCGCGCCC-CCg -3'
miRNA:   3'- -CCGCGa--Gaaa------UAUGg--CGCGCGGGcGG- -5'
23725 3' -56.6 NC_005261.1 + 119846 0.67 0.815869
Target:  5'- cGGCaGC-CUgccccugACCGUGCGCucccugaCCGCCg -3'
miRNA:   3'- -CCG-CGaGAaaua---UGGCGCGCG-------GGCGG- -5'
23725 3' -56.6 NC_005261.1 + 33610 0.67 0.816731
Target:  5'- cGGCGCgggCggcgggGCCcggggGCGCGCcCCGCa -3'
miRNA:   3'- -CCGCGa--Gaaaua-UGG-----CGCGCG-GGCGg -5'
23725 3' -56.6 NC_005261.1 + 118495 0.67 0.815869
Target:  5'- cGGCGCUgcggaccCUggc-GCCGCucggcgagGCGCCCuGCCc -3'
miRNA:   3'- -CCGCGA-------GAaauaUGGCG--------CGCGGG-CGG- -5'
23725 3' -56.6 NC_005261.1 + 4411 0.67 0.816731
Target:  5'- cGGCGCgCU----GCCGgGCcagGCCuCGCCg -3'
miRNA:   3'- -CCGCGaGAaauaUGGCgCG---CGG-GCGG- -5'
23725 3' -56.6 NC_005261.1 + 76850 0.67 0.816731
Target:  5'- -uCGCUCUccucgcGCCGCcugGCGCCCGgCg -3'
miRNA:   3'- ccGCGAGAaaua--UGGCG---CGCGGGCgG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.