miRNA display CGI


Results 21 - 40 of 661 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23725 3' -56.6 NC_005261.1 + 77464 0.79 0.233147
Target:  5'- gGGCGCggCUgca-GCCGCGCccccGCCCGCCc -3'
miRNA:   3'- -CCGCGa-GAaauaUGGCGCG----CGGGCGG- -5'
23725 3' -56.6 NC_005261.1 + 21869 0.79 0.227567
Target:  5'- cGCGCUCgcgaa--CGCGCGCCCGCg -3'
miRNA:   3'- cCGCGAGaaauaugGCGCGCGGGCGg -5'
23725 3' -56.6 NC_005261.1 + 101711 0.78 0.288642
Target:  5'- aGCGCUCcagcUGcGCCaGCGCGCCCGCg -3'
miRNA:   3'- cCGCGAGaa--AUaUGG-CGCGCGGGCGg -5'
23725 3' -56.6 NC_005261.1 + 9726 0.78 0.288642
Target:  5'- aGCGCUCc----GCCGCGacuaGCCCGCCc -3'
miRNA:   3'- cCGCGAGaaauaUGGCGCg---CGGGCGG- -5'
23725 3' -56.6 NC_005261.1 + 115842 0.78 0.288642
Target:  5'- gGGCGCg--UUGgcCCGCGCGgccCCCGCCg -3'
miRNA:   3'- -CCGCGagaAAUauGGCGCGC---GGGCGG- -5'
23725 3' -56.6 NC_005261.1 + 10376 0.78 0.281995
Target:  5'- cGCGCgcgCUgc--GCCGCGCGCUCGUCg -3'
miRNA:   3'- cCGCGa--GAaauaUGGCGCGCGGGCGG- -5'
23725 3' -56.6 NC_005261.1 + 91483 0.78 0.281995
Target:  5'- cGGCGC-CgccgcgGCCGC-CGCCCGCCc -3'
miRNA:   3'- -CCGCGaGaaaua-UGGCGcGCGGGCGG- -5'
23725 3' -56.6 NC_005261.1 + 118849 0.78 0.281995
Target:  5'- cGGCGCggagg--GCgGCGCGCCCGCg -3'
miRNA:   3'- -CCGCGagaaauaUGgCGCGCGGGCGg -5'
23725 3' -56.6 NC_005261.1 + 111626 0.78 0.269067
Target:  5'- cGGCGC-CgugccGCCGC-CGCCCGCCg -3'
miRNA:   3'- -CCGCGaGaaauaUGGCGcGCGGGCGG- -5'
23725 3' -56.6 NC_005261.1 + 108881 0.78 0.269067
Target:  5'- gGGUGgaCgacg-GCCGCGCuGCCCGCCg -3'
miRNA:   3'- -CCGCgaGaaauaUGGCGCG-CGGGCGG- -5'
23725 3' -56.6 NC_005261.1 + 95886 0.78 0.262784
Target:  5'- gGGCGCccUCUUa--ACgCGCGCGCCCGCg -3'
miRNA:   3'- -CCGCG--AGAAauaUG-GCGCGCGGGCGg -5'
23725 3' -56.6 NC_005261.1 + 89418 0.78 0.254189
Target:  5'- cGGCGCgugcgcgGCCGCcgggcuccccGCGCCCGCCg -3'
miRNA:   3'- -CCGCGagaaauaUGGCG----------CGCGGGCGG- -5'
23725 3' -56.6 NC_005261.1 + 106415 0.77 0.315019
Target:  5'- cGGCGCUgcagcggGCCGCGguccaCGCCCGCCc -3'
miRNA:   3'- -CCGCGAgaaaua-UGGCGC-----GCGGGCGG- -5'
23725 3' -56.6 NC_005261.1 + 131198 0.77 0.313587
Target:  5'- cGGCGCggucgccGCCgGCGCGCCCGCg -3'
miRNA:   3'- -CCGCGagaaauaUGG-CGCGCGGGCGg -5'
23725 3' -56.6 NC_005261.1 + 30022 0.77 0.310026
Target:  5'- cGGUGCUCUcggcugcagcggGCCGCG-GCCUGCCg -3'
miRNA:   3'- -CCGCGAGAaaua--------UGGCGCgCGGGCGG- -5'
23725 3' -56.6 NC_005261.1 + 29186 0.77 0.309318
Target:  5'- cGGCGCcCUc---GCCGCgGCGCCCGCg -3'
miRNA:   3'- -CCGCGaGAaauaUGGCG-CGCGGGCGg -5'
23725 3' -56.6 NC_005261.1 + 116642 0.77 0.300915
Target:  5'- gGGCGaggc-----CCGCGCGCCCGCCg -3'
miRNA:   3'- -CCGCgagaaauauGGCGCGCGGGCGG- -5'
23725 3' -56.6 NC_005261.1 + 31797 0.77 0.295411
Target:  5'- cGGCGCag--UGcGCCGCGCGCUgGCCu -3'
miRNA:   3'- -CCGCGagaaAUaUGGCGCGCGGgCGG- -5'
23725 3' -56.6 NC_005261.1 + 103445 0.77 0.295411
Target:  5'- cGCGcCUCgcggUcgGCCGcCGCGCCCGUCg -3'
miRNA:   3'- cCGC-GAGaa--AuaUGGC-GCGCGGGCGG- -5'
23725 3' -56.6 NC_005261.1 + 29832 0.77 0.316457
Target:  5'- cGCGCUCgccgaGCUGCGCGCCgugcuCGCCg -3'
miRNA:   3'- cCGCGAGaaauaUGGCGCGCGG-----GCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.