miRNA display CGI


Results 41 - 60 of 661 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23725 3' -56.6 NC_005261.1 + 116642 0.77 0.300915
Target:  5'- gGGCGaggc-----CCGCGCGCCCGCCg -3'
miRNA:   3'- -CCGCgagaaauauGGCGCGCGGGCGG- -5'
23725 3' -56.6 NC_005261.1 + 31797 0.77 0.295411
Target:  5'- cGGCGCag--UGcGCCGCGCGCUgGCCu -3'
miRNA:   3'- -CCGCGagaaAUaUGGCGCGCGGgCGG- -5'
23725 3' -56.6 NC_005261.1 + 103445 0.77 0.295411
Target:  5'- cGCGcCUCgcggUcgGCCGcCGCGCCCGUCg -3'
miRNA:   3'- cCGC-GAGaa--AuaUGGC-GCGCGGGCGG- -5'
23725 3' -56.6 NC_005261.1 + 2266 0.77 0.295411
Target:  5'- cGGCGCUCguccucGCCGgGCGgCgCCGCCa -3'
miRNA:   3'- -CCGCGAGaaaua-UGGCgCGC-G-GGCGG- -5'
23725 3' -56.6 NC_005261.1 + 70583 0.76 0.354
Target:  5'- gGGCGCgagCgcagcGgCGUGCGCCCGCCc -3'
miRNA:   3'- -CCGCGa--GaaauaUgGCGCGCGGGCGG- -5'
23725 3' -56.6 NC_005261.1 + 102412 0.76 0.360291
Target:  5'- aGCGCUCcuccugccGCUGCGCGgCCGCCu -3'
miRNA:   3'- cCGCGAGaaaua---UGGCGCGCgGGCGG- -5'
23725 3' -56.6 NC_005261.1 + 117492 0.76 0.361876
Target:  5'- uGCGCUUc---UACCuuGCGCCCGCCg -3'
miRNA:   3'- cCGCGAGaaauAUGGcgCGCGGGCGG- -5'
23725 3' -56.6 NC_005261.1 + 131776 0.76 0.369873
Target:  5'- gGGCGCgccgCUgggccCCGacgcCGCGCCCGCCg -3'
miRNA:   3'- -CCGCGa---GAaauauGGC----GCGCGGGCGG- -5'
23725 3' -56.6 NC_005261.1 + 44563 0.76 0.369873
Target:  5'- uGGCGCcguauuuuuUCUccGUGCUGCGCGUCCGgCg -3'
miRNA:   3'- -CCGCG---------AGAaaUAUGGCGCGCGGGCgG- -5'
23725 3' -56.6 NC_005261.1 + 2136 0.76 0.369873
Target:  5'- cGCGCUCacgu--CCgGCGCGCCCGUCc -3'
miRNA:   3'- cCGCGAGaaauauGG-CGCGCGGGCGG- -5'
23725 3' -56.6 NC_005261.1 + 120002 0.76 0.346245
Target:  5'- gGGCGCcggCUacgcgGCCGUGUGCCgCGCCg -3'
miRNA:   3'- -CCGCGa--GAaaua-UGGCGCGCGG-GCGG- -5'
23725 3' -56.6 NC_005261.1 + 109811 0.76 0.338614
Target:  5'- cGGCGCcgCUUcc-GCCGCgGCGgCCGCCg -3'
miRNA:   3'- -CCGCGa-GAAauaUGGCG-CGCgGGCGG- -5'
23725 3' -56.6 NC_005261.1 + 59147 0.76 0.335595
Target:  5'- cGGCGCgccccggGCgCGCgGCGCCCGCCc -3'
miRNA:   3'- -CCGCGagaaauaUG-GCG-CGCGGGCGG- -5'
23725 3' -56.6 NC_005261.1 + 64119 0.76 0.338614
Target:  5'- gGGCGg-Cac-GUGCCGCGCGgCCGCCa -3'
miRNA:   3'- -CCGCgaGaaaUAUGGCGCGCgGGCGG- -5'
23725 3' -56.6 NC_005261.1 + 72949 0.76 0.338614
Target:  5'- cGGCGC-Cg--GcACCGgcuCGCGCCCGCCg -3'
miRNA:   3'- -CCGCGaGaaaUaUGGC---GCGCGGGCGG- -5'
23725 3' -56.6 NC_005261.1 + 104727 0.76 0.338614
Target:  5'- gGGCGCg--UcGUGCCGCGUGCgCgCGCCg -3'
miRNA:   3'- -CCGCGagaAaUAUGGCGCGCG-G-GCGG- -5'
23725 3' -56.6 NC_005261.1 + 46738 0.76 0.338614
Target:  5'- cGGCGCgugcacGUGCCGCa-GCCCGCCg -3'
miRNA:   3'- -CCGCGagaaa-UAUGGCGcgCGGGCGG- -5'
23725 3' -56.6 NC_005261.1 + 54245 0.76 0.338614
Target:  5'- cGCGCUCa-UGUGCaGCGCGCCCuggcGCCg -3'
miRNA:   3'- cCGCGAGaaAUAUGgCGCGCGGG----CGG- -5'
23725 3' -56.6 NC_005261.1 + 130520 0.75 0.37799
Target:  5'- aGGCGCUg-----GCCgaaGCGCGCCCGCUc -3'
miRNA:   3'- -CCGCGAgaaauaUGG---CGCGCGGGCGG- -5'
23725 3' -56.6 NC_005261.1 + 109507 0.75 0.38127
Target:  5'- cGCGCcCgccgcgggguuUAUUGCGCGCCCGCCg -3'
miRNA:   3'- cCGCGaGaaau-------AUGGCGCGCGGGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.