miRNA display CGI


Results 81 - 100 of 661 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23725 3' -56.6 NC_005261.1 + 131929 0.75 0.386226
Target:  5'- uGGCGCgcgCgggaccgcgGUGCC-CGCGCCCGUCu -3'
miRNA:   3'- -CCGCGa--Gaaa------UAUGGcGCGCGGGCGG- -5'
23725 3' -56.6 NC_005261.1 + 28271 0.74 0.456191
Target:  5'- gGGCGCUgUUgccGCCGcCGCGgCCGCg -3'
miRNA:   3'- -CCGCGAgAAauaUGGC-GCGCgGGCGg -5'
23725 3' -56.6 NC_005261.1 + 108746 0.74 0.456191
Target:  5'- cGGCGCcgCggcguccGCgGCGCGCCgCGCCa -3'
miRNA:   3'- -CCGCGa-Gaaaua--UGgCGCGCGG-GCGG- -5'
23725 3' -56.6 NC_005261.1 + 101902 0.74 0.459868
Target:  5'- cGCGCUCcuccucgaaaGCCGCGUGCCC-CCg -3'
miRNA:   3'- cCGCGAGaaaua-----UGGCGCGCGGGcGG- -5'
23725 3' -56.6 NC_005261.1 + 116524 0.74 0.461712
Target:  5'- cGGCGCgaggcccGCCGCuccGCGCCCGCg -3'
miRNA:   3'- -CCGCGagaaauaUGGCG---CGCGGGCGg -5'
23725 3' -56.6 NC_005261.1 + 103280 0.74 0.465412
Target:  5'- aGCGCgccggGUGCCGCGCGCagccCCGCg -3'
miRNA:   3'- cCGCGagaaaUAUGGCGCGCG----GGCGg -5'
23725 3' -56.6 NC_005261.1 + 118085 0.74 0.465412
Target:  5'- cGCGCUCguc-UGCUgGCG-GCCCGCCg -3'
miRNA:   3'- cCGCGAGaaauAUGG-CGCgCGGGCGG- -5'
23725 3' -56.6 NC_005261.1 + 10209 0.74 0.465412
Target:  5'- cGUGCUCccaggGCC-CGCGCCUGCCc -3'
miRNA:   3'- cCGCGAGaaauaUGGcGCGCGGGCGG- -5'
23725 3' -56.6 NC_005261.1 + 78127 0.74 0.47099
Target:  5'- -cCGCUCgccacccccGCCGCcccgGCGCCCGCCg -3'
miRNA:   3'- ccGCGAGaaaua----UGGCG----CGCGGGCGG- -5'
23725 3' -56.6 NC_005261.1 + 41127 0.74 0.456191
Target:  5'- aGCGCUucCUgcGUGgCGCGCGCCaGCCg -3'
miRNA:   3'- cCGCGA--GAaaUAUgGCGCGCGGgCGG- -5'
23725 3' -56.6 NC_005261.1 + 53544 0.74 0.455274
Target:  5'- uGCGCUCUUcg-GCCGCGCcgcgGCCCaggcgcacuagcgGCCg -3'
miRNA:   3'- cCGCGAGAAauaUGGCGCG----CGGG-------------CGG- -5'
23725 3' -56.6 NC_005261.1 + 130117 0.74 0.447069
Target:  5'- uGCGC-CUUggcgagccGCCGCGCGCcguCCGCCg -3'
miRNA:   3'- cCGCGaGAAaua-----UGGCGCGCG---GGCGG- -5'
23725 3' -56.6 NC_005261.1 + 104920 0.74 0.432689
Target:  5'- gGGcCGCggugauguuUGCCGCGCGCgCGCCa -3'
miRNA:   3'- -CC-GCGagaaau---AUGGCGCGCGgGCGG- -5'
23725 3' -56.6 NC_005261.1 + 128714 0.74 0.435365
Target:  5'- aGGCGCgcccgggccCCGCcCGCCCGCCg -3'
miRNA:   3'- -CCGCGagaaauau-GGCGcGCGGGCGG- -5'
23725 3' -56.6 NC_005261.1 + 71857 0.74 0.43805
Target:  5'- uGGCGCUCgc---GCCGCuuGCGgUCCGCCc -3'
miRNA:   3'- -CCGCGAGaaauaUGGCG--CGC-GGGCGG- -5'
23725 3' -56.6 NC_005261.1 + 70925 0.74 0.43805
Target:  5'- cGCGCgagCUccagcGCCuGCGCGUCCGCCg -3'
miRNA:   3'- cCGCGa--GAaaua-UGG-CGCGCGGGCGG- -5'
23725 3' -56.6 NC_005261.1 + 95720 0.74 0.43805
Target:  5'- cGCGCUCgggcccGCCGCGCucagcgGCgCCGCCg -3'
miRNA:   3'- cCGCGAGaaaua-UGGCGCG------CG-GGCGG- -5'
23725 3' -56.6 NC_005261.1 + 134099 0.74 0.43805
Target:  5'- cGGCGCgcc----GgCGCGCGCUCGCCg -3'
miRNA:   3'- -CCGCGagaaauaUgGCGCGCGGGCGG- -5'
23725 3' -56.6 NC_005261.1 + 32666 0.74 0.447069
Target:  5'- cGCGCcgCUaac-GCCGC-CGCCCGCCg -3'
miRNA:   3'- cCGCGa-GAaauaUGGCGcGCGGGCGG- -5'
23725 3' -56.6 NC_005261.1 + 28791 0.74 0.474729
Target:  5'- gGGCGCUCgcg--GCCGCG-GCggaggcagCCGCCg -3'
miRNA:   3'- -CCGCGAGaaauaUGGCGCgCG--------GGCGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.