Results 41 - 60 of 661 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
23725 | 3' | -56.6 | NC_005261.1 | + | 29832 | 0.77 | 0.316457 |
Target: 5'- cGCGCUCgccgaGCUGCGCGCCgugcuCGCCg -3' miRNA: 3'- cCGCGAGaaauaUGGCGCGCGG-----GCGG- -5' |
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23725 | 3' | -56.6 | NC_005261.1 | + | 111352 | 0.77 | 0.316457 |
Target: 5'- cGGCGC-Cg----ACCGCGCGUCUGCUg -3' miRNA: 3'- -CCGCGaGaaauaUGGCGCGCGGGCGG- -5' |
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23725 | 3' | -56.6 | NC_005261.1 | + | 2388 | 0.77 | 0.316457 |
Target: 5'- cGGCGCgCUggcgGCgaGCGCGCCCGCg -3' miRNA: 3'- -CCGCGaGAaauaUGg-CGCGCGGGCGg -5' |
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23725 | 3' | -56.6 | NC_005261.1 | + | 1323 | 0.77 | 0.323719 |
Target: 5'- cGCGCUCcgggacGCCGcCGCGCCgCGCCu -3' miRNA: 3'- cCGCGAGaaaua-UGGC-GCGCGG-GCGG- -5' |
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23725 | 3' | -56.6 | NC_005261.1 | + | 59147 | 0.76 | 0.335595 |
Target: 5'- cGGCGCgccccggGCgCGCgGCGCCCGCCc -3' miRNA: 3'- -CCGCGagaaauaUG-GCG-CGCGGGCGG- -5' |
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23725 | 3' | -56.6 | NC_005261.1 | + | 109811 | 0.76 | 0.338614 |
Target: 5'- cGGCGCcgCUUcc-GCCGCgGCGgCCGCCg -3' miRNA: 3'- -CCGCGa-GAAauaUGGCG-CGCgGGCGG- -5' |
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23725 | 3' | -56.6 | NC_005261.1 | + | 54245 | 0.76 | 0.338614 |
Target: 5'- cGCGCUCa-UGUGCaGCGCGCCCuggcGCCg -3' miRNA: 3'- cCGCGAGaaAUAUGgCGCGCGGG----CGG- -5' |
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23725 | 3' | -56.6 | NC_005261.1 | + | 46738 | 0.76 | 0.338614 |
Target: 5'- cGGCGCgugcacGUGCCGCa-GCCCGCCg -3' miRNA: 3'- -CCGCGagaaa-UAUGGCGcgCGGGCGG- -5' |
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23725 | 3' | -56.6 | NC_005261.1 | + | 104727 | 0.76 | 0.338614 |
Target: 5'- gGGCGCg--UcGUGCCGCGUGCgCgCGCCg -3' miRNA: 3'- -CCGCGagaAaUAUGGCGCGCG-G-GCGG- -5' |
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23725 | 3' | -56.6 | NC_005261.1 | + | 72949 | 0.76 | 0.338614 |
Target: 5'- cGGCGC-Cg--GcACCGgcuCGCGCCCGCCg -3' miRNA: 3'- -CCGCGaGaaaUaUGGC---GCGCGGGCGG- -5' |
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23725 | 3' | -56.6 | NC_005261.1 | + | 64119 | 0.76 | 0.338614 |
Target: 5'- gGGCGg-Cac-GUGCCGCGCGgCCGCCa -3' miRNA: 3'- -CCGCgaGaaaUAUGGCGCGCgGGCGG- -5' |
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23725 | 3' | -56.6 | NC_005261.1 | + | 120002 | 0.76 | 0.346245 |
Target: 5'- gGGCGCcggCUacgcgGCCGUGUGCCgCGCCg -3' miRNA: 3'- -CCGCGa--GAaaua-UGGCGCGCGG-GCGG- -5' |
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23725 | 3' | -56.6 | NC_005261.1 | + | 70583 | 0.76 | 0.354 |
Target: 5'- gGGCGCgagCgcagcGgCGUGCGCCCGCCc -3' miRNA: 3'- -CCGCGa--GaaauaUgGCGCGCGGGCGG- -5' |
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23725 | 3' | -56.6 | NC_005261.1 | + | 102412 | 0.76 | 0.360291 |
Target: 5'- aGCGCUCcuccugccGCUGCGCGgCCGCCu -3' miRNA: 3'- cCGCGAGaaaua---UGGCGCGCgGGCGG- -5' |
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23725 | 3' | -56.6 | NC_005261.1 | + | 117492 | 0.76 | 0.361876 |
Target: 5'- uGCGCUUc---UACCuuGCGCCCGCCg -3' miRNA: 3'- cCGCGAGaaauAUGGcgCGCGGGCGG- -5' |
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23725 | 3' | -56.6 | NC_005261.1 | + | 131776 | 0.76 | 0.369873 |
Target: 5'- gGGCGCgccgCUgggccCCGacgcCGCGCCCGCCg -3' miRNA: 3'- -CCGCGa---GAaauauGGC----GCGCGGGCGG- -5' |
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23725 | 3' | -56.6 | NC_005261.1 | + | 44563 | 0.76 | 0.369873 |
Target: 5'- uGGCGCcguauuuuuUCUccGUGCUGCGCGUCCGgCg -3' miRNA: 3'- -CCGCG---------AGAaaUAUGGCGCGCGGGCgG- -5' |
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23725 | 3' | -56.6 | NC_005261.1 | + | 2136 | 0.76 | 0.369873 |
Target: 5'- cGCGCUCacgu--CCgGCGCGCCCGUCc -3' miRNA: 3'- cCGCGAGaaauauGG-CGCGCGGGCGG- -5' |
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23725 | 3' | -56.6 | NC_005261.1 | + | 117200 | 0.75 | 0.37799 |
Target: 5'- -aCGUUCUcc-UACCgGCGCGCCCGCUg -3' miRNA: 3'- ccGCGAGAaauAUGG-CGCGCGGGCGG- -5' |
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23725 | 3' | -56.6 | NC_005261.1 | + | 130520 | 0.75 | 0.37799 |
Target: 5'- aGGCGCUg-----GCCgaaGCGCGCCCGCUc -3' miRNA: 3'- -CCGCGAgaaauaUGG---CGCGCGGGCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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