miRNA display CGI


Results 61 - 80 of 661 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23725 3' -56.6 NC_005261.1 + 109507 0.75 0.38127
Target:  5'- cGCGCcCgccgcgggguuUAUUGCGCGCCCGCCg -3'
miRNA:   3'- cCGCGaGaaau-------AUGGCGCGCGGGCGG- -5'
23725 3' -56.6 NC_005261.1 + 71112 0.75 0.383743
Target:  5'- cGGCGCgcagCUUgcgcCCGCGCGCCacgacgcucucaagCGCCg -3'
miRNA:   3'- -CCGCGa---GAAauauGGCGCGCGG--------------GCGG- -5'
23725 3' -56.6 NC_005261.1 + 11882 0.75 0.383743
Target:  5'- gGGCGagcccgcccGCaCGCGCGCCCGCCg -3'
miRNA:   3'- -CCGCgagaaaua-UG-GCGCGCGGGCGG- -5'
23725 3' -56.6 NC_005261.1 + 72696 0.75 0.385397
Target:  5'- cGGCGCgccagGU-CCGCcagcgucGCGCCCGCCg -3'
miRNA:   3'- -CCGCGagaaaUAuGGCG-------CGCGGGCGG- -5'
23725 3' -56.6 NC_005261.1 + 46965 0.75 0.386226
Target:  5'- cGCGCcgUCgccgcUGCCGC-CGCCCGCCg -3'
miRNA:   3'- cCGCG--AGaaau-AUGGCGcGCGGGCGG- -5'
23725 3' -56.6 NC_005261.1 + 131929 0.75 0.386226
Target:  5'- uGGCGCgcgCgggaccgcgGUGCC-CGCGCCCGUCu -3'
miRNA:   3'- -CCGCGa--Gaaa------UAUGGcGCGCGGGCGG- -5'
23725 3' -56.6 NC_005261.1 + 43579 0.75 0.386226
Target:  5'- cGGCGCUUc----GCCGUGCGCgaCGCCg -3'
miRNA:   3'- -CCGCGAGaaauaUGGCGCGCGg-GCGG- -5'
23725 3' -56.6 NC_005261.1 + 104212 0.75 0.386226
Target:  5'- aGGCGCUCgcgc-GCgGCGCGCaCCGUg -3'
miRNA:   3'- -CCGCGAGaaauaUGgCGCGCG-GGCGg -5'
23725 3' -56.6 NC_005261.1 + 46283 0.75 0.386226
Target:  5'- gGGCGCUCUg---GCCGgGCaacgGCgCGCCg -3'
miRNA:   3'- -CCGCGAGAaauaUGGCgCG----CGgGCGG- -5'
23725 3' -56.6 NC_005261.1 + 31281 0.75 0.3929
Target:  5'- aGGCGCUggccgagAUCGCG-GCCCGCCg -3'
miRNA:   3'- -CCGCGAgaaaua-UGGCGCgCGGGCGG- -5'
23725 3' -56.6 NC_005261.1 + 131818 0.75 0.39458
Target:  5'- cGGCGCgccgccgCUUga---CGCgGCGCCCGCCu -3'
miRNA:   3'- -CCGCGa------GAAauaugGCG-CGCGGGCGG- -5'
23725 3' -56.6 NC_005261.1 + 124265 0.75 0.39458
Target:  5'- cGGCGC-Cgc----CCGCGCGCCCcgGCCg -3'
miRNA:   3'- -CCGCGaGaaauauGGCGCGCGGG--CGG- -5'
23725 3' -56.6 NC_005261.1 + 39594 0.75 0.39458
Target:  5'- aGCGC-Cgagc-GCCGCGCGCCCccGCCg -3'
miRNA:   3'- cCGCGaGaaauaUGGCGCGCGGG--CGG- -5'
23725 3' -56.6 NC_005261.1 + 96288 0.75 0.39458
Target:  5'- uGGCGCggCUUcggccUcgGCCGCGCGCaccugaCGCCc -3'
miRNA:   3'- -CCGCGa-GAA-----AuaUGGCGCGCGg-----GCGG- -5'
23725 3' -56.6 NC_005261.1 + 104102 0.75 0.400496
Target:  5'- cGGCGCUCcgcgcgaccgcaGCCGCGCGgUUCGCCg -3'
miRNA:   3'- -CCGCGAGaaaua-------UGGCGCGC-GGGCGG- -5'
23725 3' -56.6 NC_005261.1 + 63366 0.75 0.403049
Target:  5'- uGGCGCggugCgggUGUGCCGgGuCGCCCugGCCg -3'
miRNA:   3'- -CCGCGa---Gaa-AUAUGGCgC-GCGGG--CGG- -5'
23725 3' -56.6 NC_005261.1 + 119189 0.75 0.403049
Target:  5'- -cCGCcggaccgagagUCU----ACCGCGCGCCCGCCa -3'
miRNA:   3'- ccGCG-----------AGAaauaUGGCGCGCGGGCGG- -5'
23725 3' -56.6 NC_005261.1 + 82351 0.75 0.411633
Target:  5'- cGGCGCacgUCggcgUcgGCgCGCGCGCgCGCCg -3'
miRNA:   3'- -CCGCG---AGaa--AuaUG-GCGCGCGgGCGG- -5'
23725 3' -56.6 NC_005261.1 + 100997 0.75 0.411633
Target:  5'- cGCGCUCcgccaGCCGCGCGUCCagcgcGCCu -3'
miRNA:   3'- cCGCGAGaaauaUGGCGCGCGGG-----CGG- -5'
23725 3' -56.6 NC_005261.1 + 102807 0.75 0.42033
Target:  5'- cGGCGC-CcagccGCCGCGCGCCgGUCu -3'
miRNA:   3'- -CCGCGaGaaauaUGGCGCGCGGgCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.