Results 81 - 100 of 661 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
23725 | 3' | -56.6 | NC_005261.1 | + | 68615 | 0.75 | 0.42296 |
Target: 5'- cGGCGUgggggaggaUGCGCGCCCGCCc -3' miRNA: 3'- -CCGCGagaaauaugGCGCGCGGGCGG- -5' |
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23725 | 3' | -56.6 | NC_005261.1 | + | 12715 | 0.74 | 0.429136 |
Target: 5'- aGCgGCUCgg---GCgCGCGgGCCCGCCg -3' miRNA: 3'- cCG-CGAGaaauaUG-GCGCgCGGGCGG- -5' |
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23725 | 3' | -56.6 | NC_005261.1 | + | 104920 | 0.74 | 0.432689 |
Target: 5'- gGGcCGCggugauguuUGCCGCGCGCgCGCCa -3' miRNA: 3'- -CC-GCGagaaau---AUGGCGCGCGgGCGG- -5' |
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23725 | 3' | -56.6 | NC_005261.1 | + | 128714 | 0.74 | 0.435365 |
Target: 5'- aGGCGCgcccgggccCCGCcCGCCCGCCg -3' miRNA: 3'- -CCGCGagaaauau-GGCGcGCGGGCGG- -5' |
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23725 | 3' | -56.6 | NC_005261.1 | + | 71857 | 0.74 | 0.43805 |
Target: 5'- uGGCGCUCgc---GCCGCuuGCGgUCCGCCc -3' miRNA: 3'- -CCGCGAGaaauaUGGCG--CGC-GGGCGG- -5' |
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23725 | 3' | -56.6 | NC_005261.1 | + | 70925 | 0.74 | 0.43805 |
Target: 5'- cGCGCgagCUccagcGCCuGCGCGUCCGCCg -3' miRNA: 3'- cCGCGa--GAaaua-UGG-CGCGCGGGCGG- -5' |
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23725 | 3' | -56.6 | NC_005261.1 | + | 95720 | 0.74 | 0.43805 |
Target: 5'- cGCGCUCgggcccGCCGCGCucagcgGCgCCGCCg -3' miRNA: 3'- cCGCGAGaaaua-UGGCGCG------CG-GGCGG- -5' |
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23725 | 3' | -56.6 | NC_005261.1 | + | 134099 | 0.74 | 0.43805 |
Target: 5'- cGGCGCgcc----GgCGCGCGCUCGCCg -3' miRNA: 3'- -CCGCGagaaauaUgGCGCGCGGGCGG- -5' |
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23725 | 3' | -56.6 | NC_005261.1 | + | 130117 | 0.74 | 0.447069 |
Target: 5'- uGCGC-CUUggcgagccGCCGCGCGCcguCCGCCg -3' miRNA: 3'- cCGCGaGAAaua-----UGGCGCGCG---GGCGG- -5' |
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23725 | 3' | -56.6 | NC_005261.1 | + | 32666 | 0.74 | 0.447069 |
Target: 5'- cGCGCcgCUaac-GCCGC-CGCCCGCCg -3' miRNA: 3'- cCGCGa-GAaauaUGGCGcGCGGGCGG- -5' |
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23725 | 3' | -56.6 | NC_005261.1 | + | 53544 | 0.74 | 0.455274 |
Target: 5'- uGCGCUCUUcg-GCCGCGCcgcgGCCCaggcgcacuagcgGCCg -3' miRNA: 3'- cCGCGAGAAauaUGGCGCG----CGGG-------------CGG- -5' |
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23725 | 3' | -56.6 | NC_005261.1 | + | 41127 | 0.74 | 0.456191 |
Target: 5'- aGCGCUucCUgcGUGgCGCGCGCCaGCCg -3' miRNA: 3'- cCGCGA--GAaaUAUgGCGCGCGGgCGG- -5' |
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23725 | 3' | -56.6 | NC_005261.1 | + | 28271 | 0.74 | 0.456191 |
Target: 5'- gGGCGCUgUUgccGCCGcCGCGgCCGCg -3' miRNA: 3'- -CCGCGAgAAauaUGGC-GCGCgGGCGg -5' |
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23725 | 3' | -56.6 | NC_005261.1 | + | 108746 | 0.74 | 0.456191 |
Target: 5'- cGGCGCcgCggcguccGCgGCGCGCCgCGCCa -3' miRNA: 3'- -CCGCGa-Gaaaua--UGgCGCGCGG-GCGG- -5' |
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23725 | 3' | -56.6 | NC_005261.1 | + | 101902 | 0.74 | 0.459868 |
Target: 5'- cGCGCUCcuccucgaaaGCCGCGUGCCC-CCg -3' miRNA: 3'- cCGCGAGaaaua-----UGGCGCGCGGGcGG- -5' |
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23725 | 3' | -56.6 | NC_005261.1 | + | 116524 | 0.74 | 0.461712 |
Target: 5'- cGGCGCgaggcccGCCGCuccGCGCCCGCg -3' miRNA: 3'- -CCGCGagaaauaUGGCG---CGCGGGCGg -5' |
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23725 | 3' | -56.6 | NC_005261.1 | + | 103280 | 0.74 | 0.465412 |
Target: 5'- aGCGCgccggGUGCCGCGCGCagccCCGCg -3' miRNA: 3'- cCGCGagaaaUAUGGCGCGCG----GGCGg -5' |
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23725 | 3' | -56.6 | NC_005261.1 | + | 118085 | 0.74 | 0.465412 |
Target: 5'- cGCGCUCguc-UGCUgGCG-GCCCGCCg -3' miRNA: 3'- cCGCGAGaaauAUGG-CGCgCGGGCGG- -5' |
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23725 | 3' | -56.6 | NC_005261.1 | + | 10209 | 0.74 | 0.465412 |
Target: 5'- cGUGCUCccaggGCC-CGCGCCUGCCc -3' miRNA: 3'- cCGCGAGaaauaUGGcGCGCGGGCGG- -5' |
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23725 | 3' | -56.6 | NC_005261.1 | + | 78127 | 0.74 | 0.47099 |
Target: 5'- -cCGCUCgccacccccGCCGCcccgGCGCCCGCCg -3' miRNA: 3'- ccGCGAGaaaua----UGGCG----CGCGGGCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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