miRNA display CGI


Results 21 - 40 of 661 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23725 3' -56.6 NC_005261.1 + 46241 0.66 0.886614
Target:  5'- aGCGCgUCgcag-GCCGCgGCGgCgGCCg -3'
miRNA:   3'- cCGCG-AGaaauaUGGCG-CGCgGgCGG- -5'
23725 3' -56.6 NC_005261.1 + 100843 0.66 0.886614
Target:  5'- gGGaGCUCggcg-ACCuGCGCGUcgaaggCCGCCa -3'
miRNA:   3'- -CCgCGAGaaauaUGG-CGCGCG------GGCGG- -5'
23725 3' -56.6 NC_005261.1 + 33373 0.66 0.886614
Target:  5'- cGCGCcgggCUgcggGCCGC-CGCagCCGCCg -3'
miRNA:   3'- cCGCGa---GAaauaUGGCGcGCG--GGCGG- -5'
23725 3' -56.6 NC_005261.1 + 10244 0.66 0.886614
Target:  5'- cGCGCaCUcgccGCCGCGgGCCuggCGCCu -3'
miRNA:   3'- cCGCGaGAaauaUGGCGCgCGG---GCGG- -5'
23725 3' -56.6 NC_005261.1 + 3634 0.66 0.886614
Target:  5'- cGCGCUCcgggUGcGCCGCuaGCgCGUCu -3'
miRNA:   3'- cCGCGAGaa--AUaUGGCGcgCGgGCGG- -5'
23725 3' -56.6 NC_005261.1 + 91545 0.66 0.886614
Target:  5'- cGgGCU------ACgCGCGCGCCCGCg -3'
miRNA:   3'- cCgCGAgaaauaUG-GCGCGCGGGCGg -5'
23725 3' -56.6 NC_005261.1 + 110251 0.66 0.886614
Target:  5'- cGGCGCcCgggggGCUGCGgGCCUcCCu -3'
miRNA:   3'- -CCGCGaGaaauaUGGCGCgCGGGcGG- -5'
23725 3' -56.6 NC_005261.1 + 90797 0.66 0.886614
Target:  5'- cGGCGCgCgc--UACCGCguGCGCUgGUCu -3'
miRNA:   3'- -CCGCGaGaaauAUGGCG--CGCGGgCGG- -5'
23725 3' -56.6 NC_005261.1 + 135733 0.66 0.886614
Target:  5'- -aUGUUCgugAUGCUgGCGCGCCUcaGCCg -3'
miRNA:   3'- ccGCGAGaaaUAUGG-CGCGCGGG--CGG- -5'
23725 3' -56.6 NC_005261.1 + 72864 0.66 0.886614
Target:  5'- aGGCGUgg-----ACCGCGgGCagguCCGCCc -3'
miRNA:   3'- -CCGCGagaaauaUGGCGCgCG----GGCGG- -5'
23725 3' -56.6 NC_005261.1 + 57389 0.66 0.886614
Target:  5'- aGCaGCUCgg---GgaGCGCGCCCGUg -3'
miRNA:   3'- cCG-CGAGaaauaUggCGCGCGGGCGg -5'
23725 3' -56.6 NC_005261.1 + 1807 0.66 0.886614
Target:  5'- cGGCGCccCgggGUagaGCCGCGCGUaagCgGCCu -3'
miRNA:   3'- -CCGCGa-GaaaUA---UGGCGCGCG---GgCGG- -5'
23725 3' -56.6 NC_005261.1 + 32191 0.66 0.886614
Target:  5'- cGGCGCgcgCUgga-GCUG-GCGCCCGaCg -3'
miRNA:   3'- -CCGCGa--GAaauaUGGCgCGCGGGCgG- -5'
23725 3' -56.6 NC_005261.1 + 32301 0.66 0.88593
Target:  5'- gGGCGC-CgcccccGCCGCcgccgcggccgcgGCGCCCGgCg -3'
miRNA:   3'- -CCGCGaGaaaua-UGGCG-------------CGCGGGCgG- -5'
23725 3' -56.6 NC_005261.1 + 106551 0.66 0.885243
Target:  5'- cGGcCGCguccgg-GCCggcGCGCGCCgGCCc -3'
miRNA:   3'- -CC-GCGagaaauaUGG---CGCGCGGgCGG- -5'
23725 3' -56.6 NC_005261.1 + 58082 0.66 0.885243
Target:  5'- cGGCGCcagggcccgcguccUCgggcggcaccaGCCGCGCgagcaGCCUGCCg -3'
miRNA:   3'- -CCGCG--------------AGaaaua------UGGCGCG-----CGGGCGG- -5'
23725 3' -56.6 NC_005261.1 + 50158 0.66 0.883863
Target:  5'- cGCGUccaUCgccacaauCCGCGgGCaCCGCCg -3'
miRNA:   3'- cCGCG---AGaaauau--GGCGCgCG-GGCGG- -5'
23725 3' -56.6 NC_005261.1 + 15170 0.66 0.879669
Target:  5'- gGGCGUagCg----GCgGCgGCGCCCGCg -3'
miRNA:   3'- -CCGCGa-GaaauaUGgCG-CGCGGGCGg -5'
23725 3' -56.6 NC_005261.1 + 70381 0.66 0.879669
Target:  5'- cGGCGCcgCUg---GCCGacacgcacgaCGCGCCgCGCa -3'
miRNA:   3'- -CCGCGa-GAaauaUGGC----------GCGCGG-GCGg -5'
23725 3' -56.6 NC_005261.1 + 100630 0.66 0.879669
Target:  5'- -cCGCUCgcacaGgCGCGCgGCCCGCg -3'
miRNA:   3'- ccGCGAGaaauaUgGCGCG-CGGGCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.