miRNA display CGI


Results 61 - 80 of 661 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23725 3' -56.6 NC_005261.1 + 70540 0.66 0.872506
Target:  5'- cGGCGC--------CCGCGCcccaCCCGCCg -3'
miRNA:   3'- -CCGCGagaaauauGGCGCGc---GGGCGG- -5'
23725 3' -56.6 NC_005261.1 + 134459 0.66 0.872506
Target:  5'- aGGCGCUCUaccugGCCGCcaucgugggcgGCGUCgucgCGCUg -3'
miRNA:   3'- -CCGCGAGAaaua-UGGCG-----------CGCGG----GCGG- -5'
23725 3' -56.6 NC_005261.1 + 84275 0.66 0.872506
Target:  5'- uGGCGCag---GUGCCGCcgGCGgCCCcgGCCc -3'
miRNA:   3'- -CCGCGagaaaUAUGGCG--CGC-GGG--CGG- -5'
23725 3' -56.6 NC_005261.1 + 137544 0.66 0.872506
Target:  5'- aGGUugGCUUg--GUGCCaacccuagccucGCGC-CCCGCCa -3'
miRNA:   3'- -CCG--CGAGaaaUAUGG------------CGCGcGGGCGG- -5'
23725 3' -56.6 NC_005261.1 + 29212 0.66 0.872506
Target:  5'- gGGCGCgcgaCUggGgcCCGCGCagGCUaCGCCg -3'
miRNA:   3'- -CCGCGa---GAaaUauGGCGCG--CGG-GCGG- -5'
23725 3' -56.6 NC_005261.1 + 98196 0.66 0.872506
Target:  5'- gGGCGCggcgg--GCaGCGgGCgCCGCCa -3'
miRNA:   3'- -CCGCGagaaauaUGgCGCgCG-GGCGG- -5'
23725 3' -56.6 NC_005261.1 + 106831 0.66 0.872506
Target:  5'- aGCGCgug--GUGCgCGuCGUccaGCCCGCCg -3'
miRNA:   3'- cCGCGagaaaUAUG-GC-GCG---CGGGCGG- -5'
23725 3' -56.6 NC_005261.1 + 31407 0.66 0.872506
Target:  5'- uGGUGCUCUacg-ACC-CGCuGCCCGg- -3'
miRNA:   3'- -CCGCGAGAaauaUGGcGCG-CGGGCgg -5'
23725 3' -56.6 NC_005261.1 + 22816 0.66 0.872506
Target:  5'- cGGCGCU------GCCGC-CGC-CGCCg -3'
miRNA:   3'- -CCGCGAgaaauaUGGCGcGCGgGCGG- -5'
23725 3' -56.6 NC_005261.1 + 102673 0.66 0.872506
Target:  5'- cGGCGCcC-----AgCGcCGCGUCCGCCg -3'
miRNA:   3'- -CCGCGaGaaauaUgGC-GCGCGGGCGG- -5'
23725 3' -56.6 NC_005261.1 + 134865 0.66 0.872506
Target:  5'- aGGCGCcCgcgcccCCGCGgGCCCcuGCUg -3'
miRNA:   3'- -CCGCGaGaaauauGGCGCgCGGG--CGG- -5'
23725 3' -56.6 NC_005261.1 + 87116 0.66 0.872506
Target:  5'- cGGCGUUgUagaaggGCCGCGgguacgcgagcUGCUCGCCg -3'
miRNA:   3'- -CCGCGAgAaaua--UGGCGC-----------GCGGGCGG- -5'
23725 3' -56.6 NC_005261.1 + 103722 0.66 0.872506
Target:  5'- cGGCGUcuagcuccuUCUUg--GCgGCgGCGCCCuccGCCu -3'
miRNA:   3'- -CCGCG---------AGAAauaUGgCG-CGCGGG---CGG- -5'
23725 3' -56.6 NC_005261.1 + 89109 0.66 0.872506
Target:  5'- uGGCGCgcgCguggcACUGCGCGCgCCGg- -3'
miRNA:   3'- -CCGCGa--GaaauaUGGCGCGCG-GGCgg -5'
23725 3' -56.6 NC_005261.1 + 121850 0.66 0.872506
Target:  5'- cGGCGC-CagcagcCCGCgGCuCCCGCCg -3'
miRNA:   3'- -CCGCGaGaaauauGGCG-CGcGGGCGG- -5'
23725 3' -56.6 NC_005261.1 + 121601 0.66 0.872506
Target:  5'- cGGCcucGUUCUcgUAcACCGcCGCcuCCCGCCg -3'
miRNA:   3'- -CCG---CGAGAa-AUaUGGC-GCGc-GGGCGG- -5'
23725 3' -56.6 NC_005261.1 + 33027 0.66 0.872506
Target:  5'- gGGCGC-Cg--AUGCgGaGCGUCCGCg -3'
miRNA:   3'- -CCGCGaGaaaUAUGgCgCGCGGGCGg -5'
23725 3' -56.6 NC_005261.1 + 63514 0.66 0.872506
Target:  5'- gGGCGUcgcgaugaacUCgcaa-ACCGCG-GCCUGCCc -3'
miRNA:   3'- -CCGCG----------AGaaauaUGGCGCgCGGGCGG- -5'
23725 3' -56.6 NC_005261.1 + 84339 0.66 0.871048
Target:  5'- cGCGCUCgcgcacgcGCCaaagucgaagGCGcCGCCCGCg -3'
miRNA:   3'- cCGCGAGaaaua---UGG----------CGC-GCGGGCGg -5'
23725 3' -56.6 NC_005261.1 + 94417 0.66 0.871048
Target:  5'- gGGCGCgacgu---CCGCG-GCgCCGCCc -3'
miRNA:   3'- -CCGCGagaaauauGGCGCgCG-GGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.