miRNA display CGI


Results 41 - 60 of 661 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23725 3' -56.6 NC_005261.1 + 9726 0.78 0.288642
Target:  5'- aGCGCUCc----GCCGCGacuaGCCCGCCc -3'
miRNA:   3'- cCGCGAGaaauaUGGCGCg---CGGGCGG- -5'
23725 3' -56.6 NC_005261.1 + 10186 0.66 0.879669
Target:  5'- cGC-CUCU----GCCGCuCGCCCGaCCg -3'
miRNA:   3'- cCGcGAGAaauaUGGCGcGCGGGC-GG- -5'
23725 3' -56.6 NC_005261.1 + 10209 0.74 0.465412
Target:  5'- cGUGCUCccaggGCC-CGCGCCUGCCc -3'
miRNA:   3'- cCGCGAGaaauaUGGcGCGCGGGCGG- -5'
23725 3' -56.6 NC_005261.1 + 10244 0.66 0.886614
Target:  5'- cGCGCaCUcgccGCCGCGgGCCuggCGCCu -3'
miRNA:   3'- cCGCGaGAaauaUGGCGCgCGG---GCGG- -5'
23725 3' -56.6 NC_005261.1 + 10288 0.67 0.816731
Target:  5'- uGGCGC-Cccg--ACgCGCaGCGCCuCGCCg -3'
miRNA:   3'- -CCGCGaGaaauaUG-GCG-CGCGG-GCGG- -5'
23725 3' -56.6 NC_005261.1 + 10376 0.78 0.281995
Target:  5'- cGCGCgcgCUgc--GCCGCGCGCUCGUCg -3'
miRNA:   3'- cCGCGa--GAaauaUGGCGCGCGGGCGG- -5'
23725 3' -56.6 NC_005261.1 + 10485 0.68 0.798297
Target:  5'- cGGCccGCUgcaccggCUU--UugCGCGCGgCCGCCg -3'
miRNA:   3'- -CCG--CGA-------GAAauAugGCGCGCgGGCGG- -5'
23725 3' -56.6 NC_005261.1 + 10535 0.8 0.196429
Target:  5'- cGCGCUCgcUGUcGCCcccgGCGCGCCUGCCg -3'
miRNA:   3'- cCGCGAGaaAUA-UGG----CGCGCGGGCGG- -5'
23725 3' -56.6 NC_005261.1 + 10702 0.66 0.86513
Target:  5'- aGGCGUUCgcgg-GCCGCcuccGgGCCCcCCu -3'
miRNA:   3'- -CCGCGAGaaauaUGGCG----CgCGGGcGG- -5'
23725 3' -56.6 NC_005261.1 + 11267 0.66 0.879669
Target:  5'- cGGuCGCUCUgu---CCGUcCGUCCGUCc -3'
miRNA:   3'- -CC-GCGAGAaauauGGCGcGCGGGCGG- -5'
23725 3' -56.6 NC_005261.1 + 11882 0.75 0.383743
Target:  5'- gGGCGagcccgcccGCaCGCGCGCCCGCCg -3'
miRNA:   3'- -CCGCgagaaaua-UG-GCGCGCGGGCGG- -5'
23725 3' -56.6 NC_005261.1 + 12109 0.7 0.652452
Target:  5'- cGGCGCcagCUc--UAgCGCcaggaugGCGCCCGCCg -3'
miRNA:   3'- -CCGCGa--GAaauAUgGCG-------CGCGGGCGG- -5'
23725 3' -56.6 NC_005261.1 + 12328 0.8 0.201347
Target:  5'- gGGCGCgcgCUUg--GCCgGCGCGgCCGCCg -3'
miRNA:   3'- -CCGCGa--GAAauaUGG-CGCGCgGGCGG- -5'
23725 3' -56.6 NC_005261.1 + 12715 0.74 0.429136
Target:  5'- aGCgGCUCgg---GCgCGCGgGCCCGCCg -3'
miRNA:   3'- cCG-CGAGaaauaUG-GCGCgCGGGCGG- -5'
23725 3' -56.6 NC_005261.1 + 13045 0.73 0.484138
Target:  5'- gGGCGCggg----GCCGCGCGCgcccCUGCCg -3'
miRNA:   3'- -CCGCGagaaauaUGGCGCGCG----GGCGG- -5'
23725 3' -56.6 NC_005261.1 + 14964 0.7 0.683859
Target:  5'- gGGCGUgcCUggGgcgACUGCGCGgCCgCGCCg -3'
miRNA:   3'- -CCGCGa-GAaaUa--UGGCGCGC-GG-GCGG- -5'
23725 3' -56.6 NC_005261.1 + 15170 0.66 0.879669
Target:  5'- gGGCGUagCg----GCgGCgGCGCCCGCg -3'
miRNA:   3'- -CCGCGa-GaaauaUGgCG-CGCGGGCGg -5'
23725 3' -56.6 NC_005261.1 + 15372 0.66 0.87683
Target:  5'- cGGCGCUCggcgcccuCgGCGCcGCCgucgaUGCCg -3'
miRNA:   3'- -CCGCGAGaaauau--GgCGCG-CGG-----GCGG- -5'
23725 3' -56.6 NC_005261.1 + 15624 0.66 0.893336
Target:  5'- aGCaGCUCgacggucccgUUGUAgCGC-CGCCCgGCCg -3'
miRNA:   3'- cCG-CGAGa---------AAUAUgGCGcGCGGG-CGG- -5'
23725 3' -56.6 NC_005261.1 + 15791 0.66 0.86513
Target:  5'- gGGCGC-Cgc----CCGCGCGgCCagCGCCg -3'
miRNA:   3'- -CCGCGaGaaauauGGCGCGC-GG--GCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.