miRNA display CGI


Results 61 - 80 of 661 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23725 3' -56.6 NC_005261.1 + 15898 0.66 0.875397
Target:  5'- gGGCGCUUUaucucccgccCCGCGCaGCCgggGCCg -3'
miRNA:   3'- -CCGCGAGAaauau-----GGCGCG-CGGg--CGG- -5'
23725 3' -56.6 NC_005261.1 + 16240 0.68 0.771778
Target:  5'- gGGCGgUCgacgu-CCGCGCcggGgCCGCCg -3'
miRNA:   3'- -CCGCgAGaaauauGGCGCG---CgGGCGG- -5'
23725 3' -56.6 NC_005261.1 + 16607 0.72 0.542297
Target:  5'- aGGCGC-CgaaggUAUACC-CGCGCuCCGCg -3'
miRNA:   3'- -CCGCGaGaa---AUAUGGcGCGCG-GGCGg -5'
23725 3' -56.6 NC_005261.1 + 16698 0.67 0.84976
Target:  5'- cGCGCcgUCgaUGUACagCGCGCGCCgGUa -3'
miRNA:   3'- cCGCG--AGaaAUAUG--GCGCGCGGgCGg -5'
23725 3' -56.6 NC_005261.1 + 16729 0.71 0.63311
Target:  5'- uGGCcCUCggcgaGCCGCGCggGCgCCGCCa -3'
miRNA:   3'- -CCGcGAGaaauaUGGCGCG--CG-GGCGG- -5'
23725 3' -56.6 NC_005261.1 + 17107 0.68 0.78105
Target:  5'- aGCGCUCgauguagUUGUAUCGCGgcggcggguaCGCCgGCg -3'
miRNA:   3'- cCGCGAGa------AAUAUGGCGC----------GCGGgCGg -5'
23725 3' -56.6 NC_005261.1 + 18190 0.67 0.81845
Target:  5'- -cUGCUCUUguaccccaggGCCGCGCcgaucccccgguccaGCCCGCa -3'
miRNA:   3'- ccGCGAGAAaua-------UGGCGCG---------------CGGGCGg -5'
23725 3' -56.6 NC_005261.1 + 18593 0.69 0.743256
Target:  5'- gGGCGCagccgugCgagGUGuCCGuCGCGCgCGCCg -3'
miRNA:   3'- -CCGCGa------GaaaUAU-GGC-GCGCGgGCGG- -5'
23725 3' -56.6 NC_005261.1 + 18825 0.68 0.790191
Target:  5'- uGCGCUCUc-GUGCU-CGCGCUCGUg -3'
miRNA:   3'- cCGCGAGAaaUAUGGcGCGCGGGCGg -5'
23725 3' -56.6 NC_005261.1 + 19397 0.72 0.532424
Target:  5'- cGGgGCUCg--GUGaucggcCCGUGUGCCgCGCCg -3'
miRNA:   3'- -CCgCGAGaaaUAU------GGCGCGCGG-GCGG- -5'
23725 3' -56.6 NC_005261.1 + 19752 0.66 0.879669
Target:  5'- cGCGCUC------CCGCGCGggcgcgggcCCCGUCg -3'
miRNA:   3'- cCGCGAGaaauauGGCGCGC---------GGGCGG- -5'
23725 3' -56.6 NC_005261.1 + 19848 0.67 0.840159
Target:  5'- cGGCGUccUCggcuuccUCGCGCGagacCCCGCCg -3'
miRNA:   3'- -CCGCG--AGaaauau-GGCGCGC----GGGCGG- -5'
23725 3' -56.6 NC_005261.1 + 20147 0.72 0.549244
Target:  5'- aGCGCUCag---GCCGCGCcggcucucugcucgGCuCCGCCg -3'
miRNA:   3'- cCGCGAGaaauaUGGCGCG--------------CG-GGCGG- -5'
23725 3' -56.6 NC_005261.1 + 20195 0.69 0.752872
Target:  5'- aGGCGaagCggg--GCCGCcaaaggccccGCGCCCGCUg -3'
miRNA:   3'- -CCGCga-GaaauaUGGCG----------CGCGGGCGG- -5'
23725 3' -56.6 NC_005261.1 + 20241 0.68 0.798297
Target:  5'- -cCGCUCc----GCCGCGCGCUccaugggCGCCg -3'
miRNA:   3'- ccGCGAGaaauaUGGCGCGCGG-------GCGG- -5'
23725 3' -56.6 NC_005261.1 + 20754 0.68 0.808039
Target:  5'- gGGUGUUUggc--GCCGCcgacuuguacGCGCCCGUCu -3'
miRNA:   3'- -CCGCGAGaaauaUGGCG----------CGCGGGCGG- -5'
23725 3' -56.6 NC_005261.1 + 20824 0.66 0.86513
Target:  5'- cGCGCagCUga--ACUGCGCGUUCGCg -3'
miRNA:   3'- cCGCGa-GAaauaUGGCGCGCGGGCGg -5'
23725 3' -56.6 NC_005261.1 + 20858 0.82 0.156719
Target:  5'- uGGCgGCUCUUgc-GCCGCGgGCCgGCCa -3'
miRNA:   3'- -CCG-CGAGAAauaUGGCGCgCGGgCGG- -5'
23725 3' -56.6 NC_005261.1 + 21037 0.66 0.893336
Target:  5'- gGGCGCgc-----ACCGUGCGCCauCCu -3'
miRNA:   3'- -CCGCGagaaauaUGGCGCGCGGgcGG- -5'
23725 3' -56.6 NC_005261.1 + 21189 0.68 0.786551
Target:  5'- uGGCGCgagcgcgGCCGCGgaCGCUgGCCc -3'
miRNA:   3'- -CCGCGagaaauaUGGCGC--GCGGgCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.