miRNA display CGI


Results 81 - 100 of 661 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23725 3' -56.6 NC_005261.1 + 21387 0.68 0.790191
Target:  5'- aGGCGCgguccaCUUUGagugcguuCC-CGCGCCgCGCCg -3'
miRNA:   3'- -CCGCGa-----GAAAUau------GGcGCGCGG-GCGG- -5'
23725 3' -56.6 NC_005261.1 + 21644 0.68 0.771778
Target:  5'- cGGCGCggac---GCCGCuGcCGCaCCGCCg -3'
miRNA:   3'- -CCGCGagaaauaUGGCG-C-GCG-GGCGG- -5'
23725 3' -56.6 NC_005261.1 + 21755 0.66 0.879669
Target:  5'- uGCGC-CUgg--AgCGCGCGCcgggcgagCCGCCg -3'
miRNA:   3'- cCGCGaGAaauaUgGCGCGCG--------GGCGG- -5'
23725 3' -56.6 NC_005261.1 + 21787 0.68 0.771778
Target:  5'- cGGCGCgggcc--GCCGCaGcCGCCgGCCg -3'
miRNA:   3'- -CCGCGagaaauaUGGCG-C-GCGGgCGG- -5'
23725 3' -56.6 NC_005261.1 + 21830 0.66 0.893336
Target:  5'- gGGCGCgc---GUGCgGgCGgGCUCGCCc -3'
miRNA:   3'- -CCGCGagaaaUAUGgC-GCgCGGGCGG- -5'
23725 3' -56.6 NC_005261.1 + 21869 0.79 0.227567
Target:  5'- cGCGCUCgcgaa--CGCGCGCCCGCg -3'
miRNA:   3'- cCGCGAGaaauaugGCGCGCGGGCGg -5'
23725 3' -56.6 NC_005261.1 + 22609 0.73 0.484138
Target:  5'- cGGCGCaUCUcguc-CCGuCGCGuCCCGCCc -3'
miRNA:   3'- -CCGCG-AGAaauauGGC-GCGC-GGGCGG- -5'
23725 3' -56.6 NC_005261.1 + 22673 0.66 0.857546
Target:  5'- cGGCGCcCga-GUGCCGCcgggggacGgGCCCGgCg -3'
miRNA:   3'- -CCGCGaGaaaUAUGGCG--------CgCGGGCgG- -5'
23725 3' -56.6 NC_005261.1 + 22816 0.66 0.872506
Target:  5'- cGGCGCU------GCCGC-CGC-CGCCg -3'
miRNA:   3'- -CCGCGAgaaauaUGGCGcGCGgGCGG- -5'
23725 3' -56.6 NC_005261.1 + 23477 0.68 0.79919
Target:  5'- cGGCGg-Cga-GUGC-GCGgGCCCGCCu -3'
miRNA:   3'- -CCGCgaGaaaUAUGgCGCgCGGGCGG- -5'
23725 3' -56.6 NC_005261.1 + 24047 0.73 0.503217
Target:  5'- gGGCGUcCUUg--GgUGgGCGCCCGCCc -3'
miRNA:   3'- -CCGCGaGAAauaUgGCgCGCGGGCGG- -5'
23725 3' -56.6 NC_005261.1 + 25810 0.68 0.771778
Target:  5'- aGGCGCcaUCUgguggcGCCGCGCcggaacagagccGCUCGCUg -3'
miRNA:   3'- -CCGCG--AGAaaua--UGGCGCG------------CGGGCGG- -5'
23725 3' -56.6 NC_005261.1 + 27492 0.66 0.868105
Target:  5'- gGGCGCaccuggaccgccaggUCUgggcggGCCaGCuGgGCCCGCCc -3'
miRNA:   3'- -CCGCG---------------AGAaaua--UGG-CG-CgCGGGCGG- -5'
23725 3' -56.6 NC_005261.1 + 28169 0.7 0.663627
Target:  5'- gGGCGCcccccgUCUc---GCUGCGCGCCgaaGCCg -3'
miRNA:   3'- -CCGCG------AGAaauaUGGCGCGCGGg--CGG- -5'
23725 3' -56.6 NC_005261.1 + 28271 0.74 0.456191
Target:  5'- gGGCGCUgUUgccGCCGcCGCGgCCGCg -3'
miRNA:   3'- -CCGCGAgAAauaUGGC-GCGCgGGCGg -5'
23725 3' -56.6 NC_005261.1 + 28551 0.68 0.808039
Target:  5'- cGGCccuGCUCga-----CGCG-GCCCGCCg -3'
miRNA:   3'- -CCG---CGAGaaauaugGCGCgCGGGCGG- -5'
23725 3' -56.6 NC_005261.1 + 28791 0.74 0.474729
Target:  5'- gGGCGCUCgcg--GCCGCG-GCggaggcagCCGCCg -3'
miRNA:   3'- -CCGCGAGaaauaUGGCGCgCG--------GGCGG- -5'
23725 3' -56.6 NC_005261.1 + 28836 0.67 0.825256
Target:  5'- cGGcCGCggCUgaggcgGCCGuCGUGgCCGCCg -3'
miRNA:   3'- -CC-GCGa-GAaaua--UGGC-GCGCgGGCGG- -5'
23725 3' -56.6 NC_005261.1 + 28881 0.68 0.808039
Target:  5'- cGGCGCggac---GCCGC-CGCCUGCg -3'
miRNA:   3'- -CCGCGagaaauaUGGCGcGCGGGCGg -5'
23725 3' -56.6 NC_005261.1 + 29186 0.77 0.309318
Target:  5'- cGGCGCcCUc---GCCGCgGCGCCCGCg -3'
miRNA:   3'- -CCGCGaGAaauaUGGCG-CGCGGGCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.